Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0584 ATGGACTCTTTCTCTCCAGCATTTCTGGCCTTTAACTTTCTCCTTTATCTCTTCACCTATGTAGCTGCCACTGATTCCTTAACTGCTCAAAACCCATTTCTCAGAGATGGCTTTAGTCTGGTCTCCAAAAATGGAAATTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAATAGGAAGACGCCAATTAATGACTCATCTGGTGTACTGATGATGAACCTTACACCAGGAAATCTTACACTCTATAGCCATAATTCCACCGCCACCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAGTCCCCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAACTACTCGTGGCAAAGTTTTGATTACCCTACTGACACTCTTTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATAAATAGAAGATTAGATGCTTGGAAAAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACTAGTAGACCACTGGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAAGATGAAGTTTACTACCAATACTCTGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACATCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCAGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTAAACAAAAGCATGAATCTTGAGGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAAGATTTATATGTCAAAATGCTTGTATCAGAATTAGTCAAGCGTAGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATATCTTTGGTTGTGATTGTTGCCAGTTTCAGTTTGGCTATCCTCTTCATATGCTTATACATTTTCAAAAAGAGATCAACCGTCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTATTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTCTCGATTGATAATAAGTTGGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATGAACGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAGTTATTAGACTGGTCACAACGATACCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTCGATTGAGGATTATACATAGAGATTTAAAAGCTAGTAATGTGTTACTTGATATGGATATGAATCCGAAAATCTCTGATTTTGGTTTGGCTAAAACTTGCGGTGGAGATCAAACTGAAGGACGAACGATAAAAGTGGTCGGAACTTACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAAGTTTCTGCCACTTGAATGACCAAAATCTCATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATTGACAACGCCATTCGAGAAACATGCATTATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTCCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAGAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGGCGCAAAGAAGTTTCCAACTACTCCATGGATTTTCTTCTTGATCTCTTTGAACACCAAATTCCCTATTTAAGCAAATTTGGGAATGAAGACCAAGGTAAAGGCCAAAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCAGTTTCTCGACCCTTCTTCTTCACGCTTTAG 2655 40.64 MDSFSPAFLAFNFLLYLFTYVAATDSLTAQNPFLRDGFSLVSKNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLMMNLTPGNLTLYSHNSTATIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLVSELVKRREAHKTERLNPKVKISLVVIVASFSLAILFICLYIFKKRSTVKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDVAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKEGNPEELIDNAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPRRKEVSNYSMDFLLDLFEHQIPYLSKFGNEDQGKGQSTDSYSTVRGVDKLIPVDVYLPVSRPFFFTL 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8981569 8991475 - CaPI482276_10g005840.1 Cam10g0584 137247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0584 884 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0584 884 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Cam10g0584 884 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cam10g0584 884 CDD PAN_AP_plant 341 422 - -
Cam10g0584 884 Pfam D-mannose binding lectin 73 181 IPR001480 -
Cam10g0584 884 SMART blect_4 31 155 IPR001480 -
Cam10g0584 884 Gene3D Phosphorylase Kinase; domain 1 465 577 - -
Cam10g0584 884 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 786 - -
Cam10g0584 884 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Cam10g0584 884 SMART ntp_6 344 423 IPR003609 -
Cam10g0584 884 CDD STKc_IRAK 508 772 - -
Cam10g0584 884 PIRSF SRK 1 818 IPR024171 GO:0004674(InterPro)
Cam10g0584 884 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0584 884 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 577 - -
Cam10g0584 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0584 884 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0584 884 SUPERFAMILY Protein kinase-like (PK-like) 487 781 IPR011009 -
Cam10g0584 884 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Cam10g0584 884 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Cam10g0584 884 Gene3D - 19 152 IPR036426 -
Cam10g0584 884 CDD B_lectin 34 155 IPR001480 -
Cam10g0584 884 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Cam10g0584 884 Pfam PAN-like domain 344 409 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0543 Cam-Chr3:6286489 Cam10g0584 Cam-Chr10:8981569 5.60E-178 dispersed
Cam05g1677 Cam-Chr5:24956488 Cam10g0584 Cam-Chr10:8981569 7.90E-270 dispersed
Cam07g0598 Cam-Chr7:10521900 Cam10g0584 Cam-Chr10:8981569 1.60E-80 dispersed
Cam09g0254 Cam-Chr9:3168723 Cam10g0584 Cam-Chr10:8981569 2.30E-118 dispersed
Cam10g0584 Cam-Chr10:8981569 Cam11g0368 Cam-Chr11:5171577 1.20E-85 dispersed
Cam10g0584 Cam-Chr10:8981569 Cam10g0585 Cam-Chr10:9001580 0.00E+00 tandem
Cam05g1579 Cam-Chr5:22167652 Cam10g0584 Cam-Chr10:8981569 3.10E-06 transposed
Cam10g0584 Cam-Chr10:8981569 Cam03g0533 Cam-Chr3:6181029 2.00E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85481 PF07714 PK_Tyr_Ser-Thr 1.60E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0584 - - - 0.0