Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0585 ATGGACTCTTTCTTCTCAACACTCGTTGCCTTCAACTTAGTCTTTCTTCTCTTCAGGTCTCTTGCTGTCTCCGATTCCTTAACGGCTCAAAACCCGTATCTCAGAGATGGCCTTACTCTGGTCTCTAGAAATGGAATCTTCGAATTGGGTTTCTTCAGTCCTGGACTTCCCGCCAACCGTTACTTGGGAATCTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAACCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAACGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGGAATAGGGAAGATGAAGATCCGCGAAACTATTCCTGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATCAATATCCCGAGACTGTCATGTGGAATGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCCAATTATGTGCGTATATTGTACTTGTGGTCTGCAGCTGAAAGACGATGGAGAGTTTACACTTCATTACCAAGAGATAACTGTGACAATTATGCCCTCTGTGGCCCCTATGGATATTGTGATATAAGAGTCACCCCGTCTTGTTTATGTCTAGAAGGGTTCAAGCCAAGATCACCTGATAGTTGGGAGGCCGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTTCACAGCTCAACCAGTTGAAATTGCCAGACACTAAGTATACTTGGGTCAACAAAAGCATGAATCTTGAGGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTATGGCTTATGCAATGACAAATGTCAGTGGCAGTGGCAGTGGCTGTGCGTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTGGCATCAGAATTAGTCAAGCATGGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATTGCTTTGTTTGTGATTTCCGGTTTAGGTTTGGCTATCCTCTTCATAGGCATAGGCGTATACATTTTCAAGAAGCGATCAACCTTCAAAGATGAACAAGAGAAAATAGAAGCTCAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATTAATAGTGCCACAGATAACTTCTCACATAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAAGGAACGAATGAGTTTAAGAATGAAGTGATCCTGATCGCAAAACTGCAACATCGAAACCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAGTGCTAGTTTATGAGTATATGCCAAACAGAAGTTTGGACTTCTTTATATTTGATCAAACACAACGTCAATTATTAAATTGGTCAAAACGGTACCGAATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTAGATATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGGGATCAAACTGGAGGAAGAACATTAAGAGTGGTCGGAACTTACGGATATATGGCACCAGAGTATGCTTTTGATGGACAATTCTCAGTGAAATCTGATGCTTTTAGTTATGGCATTTTGCTGCTGGAGATCATTAGTGGGAAAAGAAGTAGAACTTTCTGCCATTTGAATGACCAAAATCTAATAGCATATGCATGGCGATTGTGGAAAGAAGGAAATATAGAAGAATTGATCGACGATGCCATTCGAGAAACATGCAGCCTTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCAAATGATCGACCCACAATGTCATTGGTGGTTATGATGTTAGGTTGTGAAATTCCTTTGTCGCAACCGAAACAACCCGGATTTTTCATAGAAAATGAAAAAGCCATTGCAATGAAAAGAGGCTCAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGACGTTGGCCGAGATGCATAGCCATTAAACACAATGGACAAATGGTTGCTATTTGTAAAAAGAGGAAACTATAA 2529 41.32 MDSFFSTLVAFNLVFLLFRSLAVSDSLTAQNPYLRDGLTLVSRNGIFELGFFSPGLPANRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNREDEDPRNYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGDLSWRMELHQYPETVMWNGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAERRWRVYTSLPRDNCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWEAGEFADGCERNKLMNCGDEVGFSQLNQLKLPDTKYTWVNKSMNLEECKQKCLRNCSCMAYAMTNVSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKHGEAHKTERLNPKVKIALFVISGLGLAILFIGIGVYIFKKRSTFKDEQEKIEAQDLELPLFDLSLINSATDNFSHNNKLGEGGFGPVYKGKLTNGQDVAVKRLSQSSGQGTNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKVLVYEYMPNRSLDFFIFDQTQRQLLNWSKRYRIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNIEELIDDAIRETCSLSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCEIPLSQPKQPGFFIENEKAIAMKRGSSKDKSTSTNELTITLPDPRRWPRCIAIKHNGQMVAICKKRKL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9001580 9005821 - CaPI482276_10g005850.1 Cam10g0585 137248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0585 842 CDD B_lectin 33 154 IPR001480 -
Cam10g0585 842 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Cam10g0585 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Cam10g0585 842 SMART blect_4 31 154 IPR001480 -
Cam10g0585 842 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544(InterPro)
Cam10g0585 842 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0585 842 Gene3D Hepatocyte Growth Factor 339 418 - -
Cam10g0585 842 CDD STKc_IRAK 508 772 - -
Cam10g0585 842 Gene3D - 20 151 IPR036426 -
Cam10g0585 842 SUPERFAMILY Protein kinase-like (PK-like) 487 772 IPR011009 -
Cam10g0585 842 CDD PAN_AP_plant 340 421 - -
Cam10g0585 842 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Cam10g0585 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 22 786 - -
Cam10g0585 842 Pfam PAN-like domain 343 408 IPR003609 -
Cam10g0585 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 577 - -
Cam10g0585 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0585 842 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cam10g0585 842 SMART ntp_6 343 422 IPR003609 -
Cam10g0585 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Cam10g0585 842 Gene3D Phosphorylase Kinase; domain 1 464 577 - -
Cam10g0585 842 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0585 842 PIRSF SRK 1 819 IPR024171 GO:0004674(InterPro)
Cam10g0585 842 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0585 842 Pfam D-mannose binding lectin 73 180 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0585 Cam-Chr10:9001580 Cam11g0368 Cam-Chr11:5171577 1.00E-86 dispersed
Cam10g0584 Cam-Chr10:8981569 Cam10g0585 Cam-Chr10:9001580 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85482 PF07714 PK_Tyr_Ser-Thr 7.50E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0585 - - - 0.0