Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0637 ATGGATCGGGTGCTAAAGGCCGCAAGAGCATCCGCTCAGGCAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTTACAACAAACTTTTTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCGTTAATGAGAATACCTGAGGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTGAAGGCATCAAACAACTCCATTTCCAGCTTGCCCGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAACGGTGATTTCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAGAATTTGCTTAATGAATTGCCTGAGAATATTGGTAGCCTATCACGCCTCATTCGTTTAAATATATTCCAAAACAAAATTTCATCAATTCCAGCTTCAATTAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGGTATTGAAAGAGTATCCAGTTGAGGCATGCAGGTTGCATCTCTTGCTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATCGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAAGTTTCTCCGAAGTAGACTTCCTGAAAATGAAGAGCCTGAAGCTAGTAGCACTCAAAGAGGGGATGTAATATCTATGGCAGCTAGAATGTCTATCACTTCAAAGGTCTTCTCTTCAAGCTCGGGCCTTCAATGGAATGGCCCTGATGATGATCAGGTGCTAAATAGCAGTCAAAGCAGCCCCAATGGAAGGTCACAACCAGGAGATCCAATAGTCATCCCAAGCGTGTTGCCCGTTGTAGAATGGTACTAA 1164 42.61 MDRVLKAARASAQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLTVLNVSYNKLFELPAAIGELPALKLLDVSFNSLMRIPEEIGSATSLVKFDCSSNHLKELPGGLGRCSDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLTVISKNLIASWTMLTELNASKNLLNELPENIGSLSRLIRLNIFQNKISSIPASIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQVLKEYPVEACRLHLLLLDLSNNSLSGLPSEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLKFLRSRLPENEEPEASSTQRGDVISMAARMSITSKVFSSSSGLQWNGPDDDQVLNSSQSSPNGRSQPGDPIVIPSVLPVVEWY 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9930247 9937335 - CaPI482276_10g006370.1 Cam10g0637 137300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0637 387 Pfam Leucine rich repeat 23 80 IPR001611 GO:0005515(InterPro)
Cam10g0637 387 Pfam Leucine rich repeat 92 149 IPR001611 GO:0005515(InterPro)
Cam10g0637 387 MobiDBLite consensus disorder prediction 348 375 - -
Cam10g0637 387 MobiDBLite consensus disorder prediction 348 370 - -
Cam10g0637 387 Pfam Leucine Rich Repeat 255 275 IPR001611 GO:0005515(InterPro)
Cam10g0637 387 SUPERFAMILY L domain-like 22 297 - -
Cam10g0637 387 SMART LRR_bac_2 252 271 - -
Cam10g0637 387 SMART LRR_bac_2 67 86 - -
Cam10g0637 387 SMART LRR_bac_2 136 155 - -
Cam10g0637 387 SMART LRR_bac_2 44 63 - -
Cam10g0637 387 SMART LRR_bac_2 183 202 - -
Cam10g0637 387 SMART LRR_bac_2 113 132 - -
Cam10g0637 387 SMART LRR_bac_2 163 179 - -
Cam10g0637 387 Gene3D Ribonuclease Inhibitor 10 152 IPR032675 -
Cam10g0637 387 PANTHER - 20 151 IPR050216 -
Cam10g0637 387 SMART LRR_typ_2 67 90 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 136 159 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 183 206 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 275 298 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 44 65 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 22 43 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 254 274 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 229 253 IPR003591 -
Cam10g0637 387 SMART LRR_typ_2 91 113 IPR003591 -
Cam10g0637 387 Gene3D Ribonuclease Inhibitor 153 246 IPR032675 -
Cam10g0637 387 Gene3D Ribonuclease Inhibitor 247 308 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0637 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33