Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0640 ATGGCGGCGGCTTCAGCGATTTTCAAAATCTTCAGGAGGTCATCTTCAGGCTGCACTAGAACAGCAAGAACAGAGACAGATGCATTTTATTTTGTGGTGTTGAGATTATACAGCGCAAGACGAAGCTGCGATCGAAGAAACCTCTTTGCGAGGATTAGTCCTCTTGGTGACCCTGAGCTTAGTGTAGTGCCGGTTCTTAATCAATGGATTGAGGAAGGCAGGAAGATCAAGGATTTTGAGCTCCGGAGAATCGTTCGCGACCTTCGTACTTCCCGGCGGTATGGGCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCGTGCAGCTTGATTTGATTGGCCGAGTTCGTGGGTTGGATTCTGCAGAGAAGTATTTTGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAAAACTGGCCAGGCTGATAAGGTTCCAAATGTACTGTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAAGTCTGATGTAATCAGTATGGAAAAGGTCTTGAAAGAAATGGAGAGTCAAACTCACATATCCATGGATTGGACTACTTATTCAATGGTTGCCAGTTTTTTCATCAAAGCCGGTATGCATGAGAAAGCAATTAGTTATCTTCGGAAATGTGAGGACAAGGTCGATCAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACACCAGTTTGGGACACAAGGATGAAGTAATGAGATTGTGGGCTCTTCAGAAGAAGTGTAAGAAGCAAGTCAACAGGGATTATATAACCATGTTGAGTTCTTTTGTAAAGCTGGAGTTGCTCGAGGAAGCTGAGAATCTTCTCGTGGAATGGGAGTCATCTTGCGAATGTTATGATTTTCGAGTTCCCAACATCGTTCTTATCGGGTATTCACAAAAGGGGTTAATTGAGAGAGCTGAAAAGATGCTTCGAAACATCATCAAAGATGGGAGGATCCCATCACCAAATAGTTGGGGCATTATTGCAGCTGGGTACTTGGAAAAGCAGAACCTGGAGAAAGCTTTTCAGAGCATGAAAGAAGCTCTTGCTGTGAAAGAGCAAAATAAAGGGTGGAGGCCCAAACCTAGCGTTTTCTCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAAGAGCTGAAAGAGTTTTTGAGCTCATTGAAGACTGTACCTTCCATGGATGGAAAACTAAATAATGCCTTGGATGAGCTTCTGAAAACCTTGAAAAATGAGGATGGAATAATGACGATGGGCGAATTAGAGATGAGGTGA 1482 42.85 MAAASAIFKIFRRSSSGCTRTARTETDAFYFVVLRLYSARRSCDRRNLFARISPLGDPELSVVPVLNQWIEEGRKIKDFELRRIVRDLRTSRRYGQALEVSEWMCSKGLFSLTTRDFAVQLDLIGRVRGLDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKSLAHMQKMKEMGFASSPLCYNDIMCLYLKTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGAKSDVISMEKVLKEMESQTHISMDWTTYSMVASFFIKAGMHEKAISYLRKCEDKVDQDALGFNHLISHYTSLGHKDEVMRLWALQKKCKKQVNRDYITMLSSFVKLELLEEAENLLVEWESSCECYDFRVPNIVLIGYSQKGLIERAEKMLRNIIKDGRIPSPNSWGIIAAGYLEKQNLEKAFQSMKEALAVKEQNKGWRPKPSVFSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLNNALDELLKTLKNEDGIMTMGELEMR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9997175 9999131 - CaPI482276_10g006400.1 Cam10g0640 137303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0640 493 SUPERFAMILY TPR-like 135 319 IPR011990 GO:0005515(InterPro)
Cam10g0640 493 Coils Coil 404 424 - -
Cam10g0640 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cam10g0640 493 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515(InterPro)
Cam10g0640 493 Pfam PPR repeat 360 386 IPR002885 -
Cam10g0640 493 Pfam PPR repeat 255 279 IPR002885 -
Cam10g0640 493 Pfam PPR repeat 150 178 IPR002885 -
Cam10g0640 493 Pfam PPR repeat 324 349 IPR002885 -
Cam10g0640 493 SUPERFAMILY TPR-like 260 425 IPR011990 GO:0005515(InterPro)
Cam10g0640 493 Gene3D Tetratricopeptide repeat domain 80 236 IPR011990 GO:0005515(InterPro)
Cam10g0640 493 NCBIfam pentatricopeptide repeat 149 178 IPR002885 -
Cam10g0640 493 NCBIfam pentatricopeptide repeat 184 216 IPR002885 -
Cam10g0640 493 PANTHER OS12G0527900 PROTEIN 30 465 - GO:0005739(PANTHER)
Cam10g0640 493 Gene3D Tetratricopeptide repeat domain 237 355 IPR011990 GO:0005515(InterPro)
Cam10g0640 493 Gene3D Tetratricopeptide repeat domain 356 490 IPR011990 GO:0005515(InterPro)
Cam10g0640 493 Pfam PPR repeat family 184 227 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0295 Cam-Chr5:2807598 Cam10g0640 Cam-Chr10:9997175 1.10E-38 dispersed
Cam07g0293 Cam-Chr7:3982407 Cam10g0640 Cam-Chr10:9997175 1.30E-73 dispersed
Cam07g0294 Cam-Chr7:3986975 Cam10g0640 Cam-Chr10:9997175 5.00E-36 dispersed
Cam07g0295 Cam-Chr7:3987985 Cam10g0640 Cam-Chr10:9997175 5.80E-14 dispersed
Cam09g1597 Cam-Chr9:27013391 Cam10g0640 Cam-Chr10:9997175 5.00E-31 dispersed
Cam10g0640 Cam-Chr10:9997175 Cam10g1775 Cam-Chr10:31815938 6.80E-06 dispersed
Cam10g0640 Cam-Chr10:9997175 Cam03g0604 Cam-Chr3:6888148 8.60E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62