Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0643 ATGGTCAAGTTAATTTGGAATTTAAGTTCGAGTTGGGTACAAGTACAAGATCCAAATCCGACTTACGACGTAAATAATGGGAGGACGGCACCTGTCACCCACGTGCTAGAGTTCTATTGGTCTGTGTTTGAACTTGTATCAACGTCACGGTATGCCAGTCCCCAGCATCCTCATCCATTCGTCCTCCATTCATTGCCACATCAAACCAAAACCCCGAATTTCCCCAATTTTGCCCAAACTTCTCACTCGCAAGTCGCAACCACTATCACCCATCAATCCCTTCCTCCGATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCCTCCGCCTTGGCTTCCACCGCTTTCTCCGGCCGTCGGAGCTCCGTCGCTCTCCCGCAGTGCAGAGGCTTGAAGATCGCTCACAGCTTCACTTCCCACTCTATAAGATCTGCCAGATCTAATGCTAGATTTACTCAGCGTTCGGCAACTATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTAACTGGAAGTCACTGGTTATAGAATCTAAATTACCCGTACTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCAATCATTGATGACCTATCTAAAGAGTACGCTGGAAAGTTCAAATTTTACAAGGTGGATACCGATAACAACTCTTCAATTGCATCCCAATATGGTATCAGAAGCATACCTACAGTCATTATCTTCAAAGATGGTGAGAAGAAGGAGGCAATAATAGGTGCAGTTCCTAAAGCAACTTTGACAGCCAGCATGGAAAAATTCTTGTAG 822 46.72 MVKLIWNLSSSWVQVQDPNPTYDVNNGRTAPVTHVLEFYWSVFELVSTSRYASPQHPHPFVLHSLPHQTKTPNFPNFAQTSHSQVATTITHQSLPPMATVLDSLTLPCSSALASTAFSGRRSSVALPQCRGLKIAHSFTSHSIRSARSNARFTQRSATIVCEAQETAAIVPAASEANWKSLVIESKLPVLVEFWAPWCGPCRMIHPIIDDLSKEYAGKFKFYKVDTDNNSSIASQYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASMEKFL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10049117 10051586 - CaPI482276_10g006430.1 Cam10g0643 137306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0643 273 Pfam Thioredoxin 173 270 IPR013766 -
Cam10g0643 273 ProSiteProfiles Thioredoxin domain profile. 157 273 IPR013766 -
Cam10g0643 273 FunFam Thioredoxin 164 273 - -
Cam10g0643 273 NCBIfam thioredoxin 174 272 IPR005746 GO:0015035(InterPro)
Cam10g0643 273 CDD TRX_family 176 270 - -
Cam10g0643 273 PANTHER GEO12009P1 145 273 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cam10g0643 273 SUPERFAMILY Thioredoxin-like 170 273 IPR036249 -
Cam10g0643 273 PRINTS Thioredoxin family signature 197 206 - -
Cam10g0643 273 PRINTS Thioredoxin family signature 189 197 - -
Cam10g0643 273 PRINTS Thioredoxin family signature 237 248 - -
Cam10g0643 273 ProSitePatterns Thioredoxin family active site. 190 208 IPR017937 -
Cam10g0643 273 Gene3D Glutaredoxin 170 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0643 K03671 - - csv:101204508 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0633 Cam-Chr2:7323978 Cam10g0643 Cam-Chr10:10049117 1.20E-28 dispersed
Cam08g1084 Cam-Chr8:17209299 Cam10g0643 Cam-Chr10:10049117 1.20E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43