Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0698 ATGATTCAGTCAGGGATTCCAACGCAAGTTTTGGCAGGAATTGATTGTGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGTCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAAAAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTTCTCCCCTAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3084 42.83 MIQSGIPTQVLAGIDCVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVVGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQKVELERSGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSSPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11238789 11256298 + CaPI482276_10g006980.1 Cam10g0698 137361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0698 1027 MobiDBLite consensus disorder prediction 891 956 - -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 562 606 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 510 556 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 404 449 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 457 501 IPR001005 -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 396 452 IPR009057 -
Cam10g0698 1027 Gene3D - 401 452 - -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 557 611 IPR017930 -
Cam10g0698 1027 ProSiteProfiles SANT domain profile. 455 504 IPR017884 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 452 503 IPR001005 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 985 999 - -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 507 603 IPR009057 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 557 607 IPR001005 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 399 451 IPR001005 -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 556 IPR017930 -
Cam10g0698 1027 CDD SANT 513 554 IPR001005 -
Cam10g0698 1027 Gene3D - 507 561 - -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 917 932 - -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 452 507 IPR017930 -
Cam10g0698 1027 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 29 1018 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cam10g0698 1027 MobiDBLite consensus disorder prediction 695 717 - -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 505 556 IPR001005 -
Cam10g0698 1027 Gene3D - 456 506 - -
Cam10g0698 1027 CDD SANT 564 607 IPR001005 -
Cam10g0698 1027 CDD SANT 459 503 IPR001005 -
Cam10g0698 1027 Gene3D - 564 610 - -
Cam10g0698 1027 SMART sant 403 453 IPR001005 -
Cam10g0698 1027 SMART sant 509 558 IPR001005 -
Cam10g0698 1027 SMART sant 303 400 IPR001005 -
Cam10g0698 1027 SMART sant 456 505 IPR001005 -
Cam10g0698 1027 SMART sant 561 609 IPR001005 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 980 1004 - -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 436 506 IPR009057 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 671 694 - -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 635 729 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0698 K09422 - - csv:101216287 1669.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1071 Cam-Chr6:17372716 Cam10g0698 Cam-Chr10:11238789 1.30E-10 dispersed
Cam10g0698 Cam-Chr10:11238789 Cam06g1850 Cam-Chr6:29588124 4.00E-16 dispersed
Cam10g0697 Cam-Chr10:11221225 Cam10g0698 Cam-Chr10:11238789 9.60E-49 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52717 PF13921 Myb_DNA-bind_6 2.50E-11 CL0123 Cam TF