Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0698 ATGATTCAGTCAGGGATTCCAACGCAAGTTTTGGCAGGAATTGATTGTGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGTCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAAAAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTTCTCCCCTAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3084 42.83 MIQSGIPTQVLAGIDCVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVVGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQKVELERSGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSSPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11238789 11256298 + CaPI482276_10g006980.1 Cam10g0698 137361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0698 1027 MobiDBLite consensus disorder prediction 891 956 - -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 562 606 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 510 556 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 404 449 IPR001005 -
Cam10g0698 1027 Pfam Myb-like DNA-binding domain 457 501 IPR001005 -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 396 452 IPR009057 -
Cam10g0698 1027 Gene3D - 401 452 - -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 557 611 IPR017930 -
Cam10g0698 1027 ProSiteProfiles SANT domain profile. 455 504 IPR017884 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 452 503 IPR001005 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 985 999 - -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 507 603 IPR009057 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 557 607 IPR001005 -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 399 451 IPR001005 -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 556 IPR017930 -
Cam10g0698 1027 CDD SANT 513 554 IPR001005 -
Cam10g0698 1027 Gene3D - 507 561 - -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 917 932 - -
Cam10g0698 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 452 507 IPR017930 -
Cam10g0698 1027 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 29 1018 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cam10g0698 1027 MobiDBLite consensus disorder prediction 695 717 - -
Cam10g0698 1027 ProSiteProfiles Myb-like domain profile. 505 556 IPR001005 -
Cam10g0698 1027 Gene3D - 456 506 - -
Cam10g0698 1027 CDD SANT 564 607 IPR001005 -
Cam10g0698 1027 CDD SANT 459 503 IPR001005 -
Cam10g0698 1027 Gene3D - 564 610 - -
Cam10g0698 1027 SMART sant 403 453 IPR001005 -
Cam10g0698 1027 SMART sant 509 558 IPR001005 -
Cam10g0698 1027 SMART sant 303 400 IPR001005 -
Cam10g0698 1027 SMART sant 456 505 IPR001005 -
Cam10g0698 1027 SMART sant 561 609 IPR001005 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 980 1004 - -
Cam10g0698 1027 SUPERFAMILY Homeodomain-like 436 506 IPR009057 -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 671 694 - -
Cam10g0698 1027 MobiDBLite consensus disorder prediction 635 729 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1071 Cam-Chr6:17372716 Cam10g0698 Cam-Chr10:11238789 1.30E-10 dispersed
Cam10g0698 Cam-Chr10:11238789 Cam06g1850 Cam-Chr6:29588124 4.00E-16 dispersed
Cam10g0697 Cam-Chr10:11221225 Cam10g0698 Cam-Chr10:11238789 9.60E-49 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52717 PF13921 Myb_DNA-bind_6 2.50E-11 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0698 K09422 - csv:101216287 1669.83