Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0706 ATGGAGGGAATGCCGCACCCGATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGTTGAAATTTCTATTTATGTATAG 864 48.5 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEVEISIYV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11447040 11453957 - CaPI482276_10g007060.1 Cam10g0706 137369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0706 287 MobiDBLite consensus disorder prediction 141 200 - -
Cam10g0706 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cam10g0706 287 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cam10g0706 287 FunFam PHD finger alfin-like protein 194 250 - -
Cam10g0706 287 Pfam PHD-finger 202 248 IPR019787 -
Cam10g0706 287 CDD PHD_AL_plant 202 251 IPR044104 -
Cam10g0706 287 MobiDBLite consensus disorder prediction 141 162 - -
Cam10g0706 287 MobiDBLite consensus disorder prediction 183 200 - -
Cam10g0706 287 SUPERFAMILY FYVE/PHD zinc finger 190 254 IPR011011 -
Cam10g0706 287 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cam10g0706 287 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cam10g0706 287 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cam10g0706 287 MobiDBLite consensus disorder prediction 163 182 - -
Cam10g0706 287 SMART PHD_3 201 249 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1545 Cam-Chr3:30391170 Cam10g0706 Cam-Chr10:11447040 1.10E-30 dispersed
Cam09g0081 Cam-Chr9:1672909 Cam10g0706 Cam-Chr10:11447040 1.20E-94 dispersed
Cam10g0706 Cam-Chr10:11447040 Cam10g2172 Cam-Chr10:35194335 3.70E-81 dispersed
Cam10g0706 Cam-Chr10:11447040 Cam11g0168 Cam-Chr11:3264846 4.00E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52718 PF12165 Alfin 3.30E-68 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0706 K26274 - csv:101212601 486.878