Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0719 ATGGAACGTCCAAAAGAATTGAGAGAACAGAGACGTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTATTTCAGAAGAACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCACCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCAGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCCTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTATTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCGGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTATGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGTGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCAGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTCCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGATTACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCAGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2301 42.63 MERPKELREQRRFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWSTHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDSSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSITKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11880751 11888888 - CaPI482276_10g007190.1 Cam10g0719 137382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0719 766 MobiDBLite consensus disorder prediction 531 697 - -
Cam10g0719 766 Gene3D - 335 390 IPR023408 -
Cam10g0719 766 MobiDBLite consensus disorder prediction 674 697 - -
Cam10g0719 766 Gene3D - 230 333 - -
Cam10g0719 766 MobiDBLite consensus disorder prediction 729 766 - -
Cam10g0719 766 Pfam Mechanosensitive ion channel, beta-domain 319 389 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g0719 766 SUPERFAMILY Sm-like ribonucleoproteins 319 389 IPR010920 -
Cam10g0719 766 MobiDBLite consensus disorder prediction 739 766 - -
Cam10g0719 766 MobiDBLite consensus disorder prediction 608 625 - -
Cam10g0719 766 MobiDBLite consensus disorder prediction 567 586 - -
Cam10g0719 766 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 38 743 IPR045042 -
Cam10g0719 766 MobiDBLite consensus disorder prediction 639 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0719 K22047 - - csv:101217250 1278.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1624 Cam-Chr8:22450235 Cam10g0719 Cam-Chr10:11880751 3.00E-190 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0167 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.3 9.8e-154 540.4
Cam08g1624 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cam10g0719 . 92 765 Mechanosensitive Ion Channel Family AT5G10490 55.4 7.9e-191 664.1
Cam08g1624 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.7e-199 692.2
Cam10g0719 . 80 542 Mechanosensitive Ion Channel Family AT1G58200 65.2 6.4e-172 601.3
Cam02g1162 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.9 8.1e-260 893.6
Cam02g0406 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.2 1.2e-239 826.6
Cam02g1162 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.8 9.8e-247 850.1
Cam02g1162 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.5 1.8e-280 962.2
Cam02g0406 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.3e-270 929.5
Cam02g1162 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.4 4.1e-237 818.1
Cam02g0406 . 266 950 Mechanosensitive Ion Channel Family AT2G17000 57.7 3.7e-222 768.5
Cam02g1162 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.1 7.0e-163 571.2
Cam05g1732 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.0 3.0e-183 639.0
Cam05g1732 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 3.7e-202 701.8
Cam03g1541 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71