Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0726 ATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACCCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATAATGGATGGAGTAACAATAATACATCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCATCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACTATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACTCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGACAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATCGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCTGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCCGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATCGGGGGAGCAGCAAAGAGGCTGAAGCTTTGTCTGGAATCCGATCAGAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACTGTGCAAGCTGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1491 47.15 MLRSTDSPFLPYDSSSTPSPHYLLDNFYSHNGWSNNNTSHPKSSQLFFMDGDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12128239 12132032 - CaPI482276_10g007260.1 Cam10g0726 137389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0726 496 CDD AP2 219 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 ProSiteProfiles AP2/ERF domain profile. 220 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 PRINTS Ethylene responsive element binding protein signature 359 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 FunFam AP2-like ethylene-responsive transcription factor 318 379 - -
Cam10g0726 496 CDD AP2 318 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 SUPERFAMILY DNA-binding domain 318 379 IPR016177 GO:0003677(InterPro)
Cam10g0726 496 SUPERFAMILY DNA-binding domain 219 285 IPR016177 GO:0003677(InterPro)
Cam10g0726 496 FunFam AP2-like ethylene-responsive transcription factor ANT 219 285 - -
Cam10g0726 496 ProSiteProfiles AP2/ERF domain profile. 319 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 413 - -
Cam10g0726 496 Gene3D AP2/ERF domain 220 285 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 Gene3D AP2/ERF domain 319 379 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 SMART rav1_2 220 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 SMART rav1_2 319 383 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0726 496 Pfam AP2 domain 320 369 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2145 Cam-Chr8:26838530 Cam10g0726 Cam-Chr10:12128239 1.10E-85 dispersed
Cam10g0726 Cam-Chr10:12128239 Cam11g0921 Cam-Chr11:13512729 2.10E-100 dispersed
Cam10g0726 Cam-Chr10:12128239 Cam01g1825 Cam-Chr1:31775597 5.10E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52720 PF00847 AP2 1.80E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0726 K09285 - csv:101217714 848.58