Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0790 ATGCAGCTTCTTCTCCTTCTCTTTCTCCTTCTTCACCTCCATCTTCATCTCTCCCTTTCTTCTCACTTGCCTGAATATCGCGCTCTTCTCTCTCTCAAGAGCTCGTTTTCCGATGACTCCCAATCGCCGCTCTCCACTTGGGACGCCGCCACTGCCCACTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTCGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGGTTCTCTCCGGTTTCTCTCTAATCTCTCCCTCCCGTCCAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCCATCTCTACGCTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGTACATTGCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATACAGTTGCCAAATCTCCGCCATTTGCATCTCGGGGGGAACTTCTTCTCCGGTGTGATTCCGCCGGGGTATGGAATGTGGCAGTTCATGGAGTATTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGATCCCGCCGGAGATTGGTAATCTGACGAAGCTTCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGGTTTGCCGCCGGAAATTGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTGACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTATCTAACAACATTCTTGTTGGTGAGATTCCGGAGTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGCTGGAAGTATTGCAGTTGTGGGAAAATAACTTCACTGGTTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCAAACAAGTTGACTGGAACTTTGCCTCCCGATATGTGCAATGGAAATAAACTTCAAACTCTGATAACCCTCGGTAATTTCTTGTTTGGTCCAATCCCTGAATCTCTTGGTAATTGCGAGTCGTTGAGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTTCCATCCCGAACGGTCTCTTCGGTTTGCCTAATCTTTCTCAAGTGGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCGGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGGCTCTCGGGATCCCTTCCATCGATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGACGGTTACAGCAGCTGTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCGGAGATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCGGGTGAGATTCCAAATGAAATCACCACAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACGGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCGTACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACACAGCAGCCTCATTTAAAAGCCTCACTCTCTTCTTCTGTGAAACTTCTGCTTGTCATTGTCTTGCTCGTCTGCTCGATCGCATTTGCCATTGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCAAGCGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGACTAGATTTCACAGCAGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGTGCTGGGATCGTTTACAAAGGTTTTATGCCGAGTGGCGATCACATCGCTGTGAAAAGACTGCCGGCGATGGGGCGAGGGTCGTCCCATGACCATGGATTCAATGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGTTTCTGCTCAAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCGCCATTGATTGTCCATCGAGATGTAAAATCAAACAACATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTAGACGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTACTCTTAGAACTGGTGAGTGGGCGGAAGCCCGTCGGAGAATTTGGCGATGGGGTCGACATAGTTCAGTGGGTCAGGAAAATGACTAGTCCCAACAATGAAGGGGTAGCGAAAATCATTGATCCACGGCTCTCCTCAGTCCCGCTGAATGAAGTAACTCATGTATTCTATGTAGCAATGCTATGTGTGGAAGACCAAGCCGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTCACAGAACTCCCAAGGCCACCAACTTCAAAACAAATAAACTCAAAAGAAGCCGAAGTAACAACCCCGCCGCTGCTGCCATCGTCCCCGGTGGTGGCATCAGATTCACCGAACAAAGCACAGCCACCACCTGATCTTCTGAGCATTTGA 3027 46.58 MQLLLLLFLLLHLHLHLSLSSHLPEYRALLSLKSSFSDDSQSPLSTWDAATAHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLSNLSLPSNQISGPIPPEISAISTLKYLNLSNNLINGTLPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGMWQFMEYLAVSGNELQGPIPPEIGNLTKLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPESFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNKLQTLITLGNFLFGPIPESLGNCESLSRIRMGENFLNGSIPNGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPSMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKASLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDHIAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVAKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRPPTSKQINSKEAEVTTPPLLPSSPVVASDSPNKAQPPPDLLSI 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15046422 15049621 + CaPI482276_10g007900.1 Cam10g0790 137453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0790 1008 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Cam10g0790 1008 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 355 376 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cam10g0790 1008 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0790 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cam10g0790 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 962 IPR050647 -
Cam10g0790 1008 MobiDBLite consensus disorder prediction 966 1008 - -
Cam10g0790 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0790 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cam10g0790 1008 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cam10g0790 1008 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Cam10g0790 1008 SUPERFAMILY L domain-like 296 615 - -
Cam10g0790 1008 SMART LRR_typ_2 160 183 IPR003591 -
Cam10g0790 1008 SMART LRR_typ_2 281 305 IPR003591 -
Cam10g0790 1008 SMART LRR_typ_2 497 521 IPR003591 -
Cam10g0790 1008 SMART LRR_typ_2 354 377 IPR003591 -
Cam10g0790 1008 SMART LRR_typ_2 569 592 IPR003591 -
Cam10g0790 1008 SMART LRR_typ_2 329 353 IPR003591 -
Cam10g0790 1008 Gene3D Ribonuclease Inhibitor 221 378 IPR032675 -
Cam10g0790 1008 MobiDBLite consensus disorder prediction 966 995 - -
Cam10g0790 1008 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0790 1008 Gene3D Ribonuclease Inhibitor 24 134 IPR032675 -
Cam10g0790 1008 SUPERFAMILY RNI-like 69 391 - -
Cam10g0790 1008 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0790 1008 SUPERFAMILY Protein kinase-like (PK-like) 685 960 IPR011009 -
Cam10g0790 1008 Gene3D Ribonuclease Inhibitor 135 220 IPR032675 -
Cam10g0790 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cam10g0790 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Cam10g0790 1008 Gene3D Ribonuclease Inhibitor 379 615 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1845 Cam-Chr1:31961259 Cam10g0790 Cam-Chr10:15046422 9.10E-23 dispersed
Cam01g1846 Cam-Chr1:31977690 Cam10g0790 Cam-Chr10:15046422 1.10E-21 dispersed
Cam01g2657 Cam-Chr1:38050283 Cam10g0790 Cam-Chr10:15046422 4.20E-132 dispersed
Cam03g0640 Cam-Chr3:7257531 Cam10g0790 Cam-Chr10:15046422 2.60E-89 dispersed
Cam05g0411 Cam-Chr5:3787609 Cam10g0790 Cam-Chr10:15046422 7.90E-76 dispersed
Cam05g1988 Cam-Chr5:28696874 Cam10g0790 Cam-Chr10:15046422 2.80E-08 dispersed
Cam10g0660 Cam-Chr10:10314556 Cam10g0790 Cam-Chr10:15046422 1.60E-139 dispersed
Cam10g0790 Cam-Chr10:15046422 Cam11g1509 Cam-Chr11:27951395 1.80E-74 dispersed
Cam10g0787 Cam-Chr10:14888227 Cam10g0790 Cam-Chr10:15046422 8.00E-75 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85486 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0790 - - - 0.0