Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0806 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCCCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTGTTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTTGTTGGATTGAGCTACAATGGAATCGACAACATTCTCGAAACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGTTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACTCTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTAGCAAACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGAAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATGCGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCAGAGTTTTATGTGCCCGATCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAAGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAAGCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCAATTGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCTAACATAA 2043 46.35 MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFPVRRYLRDMDINNSSTLFNVTLQRKGGYVIMDNGIVLVTLSTPDGDVVGLSYNGIDNILETKNEEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYSFPQSEDFPSSAQRGSVTGRLLVRDGYISSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKCEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTKDWFYAHVNRNVGNQTYQATTWEIRFLLQSVNQTANYTLQIALASAAECELQVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPPLT 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16149035 16160891 + CaPI482276_10g008060.1 Cam10g0806 137469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0806 680 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
Cam10g0806 680 SUPERFAMILY Galactose-binding domain-like 484 675 IPR008979 -
Cam10g0806 680 Gene3D - 374 476 - -
Cam10g0806 680 CDD RGL4_N 60 344 - -
Cam10g0806 680 CDD RGL4_M 377 473 IPR029413 -
Cam10g0806 680 Gene3D - 52 341 IPR014718 GO:0030246(InterPro)
Cam10g0806 680 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Cam10g0806 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Cam10g0806 680 SUPERFAMILY Galactose mutarotase-like 65 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cam10g0806 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 678 IPR051850 -
Cam10g0806 680 CDD RGL4_C 488 675 - -
Cam10g0806 680 FunFam Rhamnogalacturonate lyase B 374 473 - -
Cam10g0806 680 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Cam10g0806 680 Gene3D - 484 675 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0806 Cam-Chr10:16149035 Cam11g1493 Cam-Chr11:27738624 4.50E-234 dispersed
Cam10g0806 Cam-Chr10:16149035 Cam01g1868 Cam-Chr1:32217605 1.30E-236 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0806 K18195 - csv:101215252 1269.6