Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0817 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTATTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTGCACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCAGTGGAGGCGGCAGCGAAACTCACCAGAAATTTATTGATGTCAACAACAAGATGATGATGATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATCGCCAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTGAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGTCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAGTCCTTCCGCCGCATGTTAG 834 44.96 MGLDDFCQTGLVLGLGLSNDQRLKKKPAPCSSSSLDFEPCALTLGFSGSGGGSETHQKFIDVNNKMMMINNNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVELDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKSLKLAQPLYMQMPAATLTICPSCERLGGGGASKPKFSMAPKPHFYNPFSSPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17342588 17343652 - CaPI482276_10g008170.1 Cam10g0817 137480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0817 277 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam10g0817 277 SMART halz 191 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0817 277 FunFam Homeobox-leucine zipper protein 18 121 196 - -
Cam10g0817 277 Pfam Homeobox associated leucine zipper 191 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0817 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 254 IPR050762 -
Cam10g0817 277 CDD homeodomain 135 192 IPR001356 GO:0003677(InterPro)
Cam10g0817 277 MobiDBLite consensus disorder prediction 85 111 - -
Cam10g0817 277 Pfam Homeodomain 135 189 IPR001356 GO:0003677(InterPro)
Cam10g0817 277 Coils Coil 197 227 - -
Cam10g0817 277 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cam10g0817 277 SUPERFAMILY Homeodomain-like 123 192 IPR009057 -
Cam10g0817 277 SMART HOX_1 133 195 IPR001356 GO:0003677(InterPro)
Cam10g0817 277 Gene3D - 139 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1836 Cam-Chr1:31906267 Cam10g0817 Cam-Chr10:17342588 1.90E-76 dispersed
Cam05g1931 Cam-Chr5:28241392 Cam10g0817 Cam-Chr10:17342588 1.70E-51 dispersed
Cam06g1533 Cam-Chr6:26792042 Cam10g0817 Cam-Chr10:17342588 4.00E-40 dispersed
Cam10g0817 Cam-Chr10:17342588 Cam10g1725 Cam-Chr10:31297265 1.90E-50 dispersed
Cam10g0817 Cam-Chr10:17342588 Cam09g0376 Cam-Chr9:4132383 1.10E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52723 PF00046 Homeodomain 5.20E-16 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0817 K09338 - csv:101205848 369.777