Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0839 ATGGAGTTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACCGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAATCTCTTTTGA 579 54.23 MELEEHEEEDMEIVEPPSNYINKIHPLSRHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDRGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRNLF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18645689 18649027 + CaPI482276_10g008390.1 Cam10g0839 137502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0839 192 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cam10g0839 192 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cam10g0839 192 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cam10g0839 192 Gene3D - 121 189 - -
Cam10g0839 192 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam10g0839 192 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cam10g0839 192 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cam10g0839 192 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2628 Cam-Chr5:33790417 Cam10g0839 Cam-Chr10:18645689 1.20E-31 dispersed
Cam08g1972 Cam-Chr8:25579420 Cam10g0839 Cam-Chr10:18645689 1.10E-38 dispersed
Cam09g1872 Cam-Chr9:33294763 Cam10g0839 Cam-Chr10:18645689 8.50E-36 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam11g0009 Cam-Chr11:1609440 2.40E-36 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam01g1893 Cam-Chr1:32420380 1.50E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52725 PF04770 ZF-HD_dimer 4.40E-28 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0839 - - - 0.0