Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0839 ATGGAGTTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACCGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAATCTCTTTTGA 579 54.23 MELEEHEEEDMEIVEPPSNYINKIHPLSRHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDRGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRNLF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18645689 18649027 + CaPI482276_10g008390.1 Cam10g0839 137502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0839 192 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cam10g0839 192 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cam10g0839 192 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cam10g0839 192 Gene3D - 121 189 - -
Cam10g0839 192 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam10g0839 192 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cam10g0839 192 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cam10g0839 192 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0839 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2628 Cam-Chr5:33790417 Cam10g0839 Cam-Chr10:18645689 1.20E-31 dispersed
Cam08g1972 Cam-Chr8:25579420 Cam10g0839 Cam-Chr10:18645689 1.10E-38 dispersed
Cam09g1872 Cam-Chr9:33294763 Cam10g0839 Cam-Chr10:18645689 8.50E-36 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam11g0009 Cam-Chr11:1609440 2.40E-36 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam01g1893 Cam-Chr1:32420380 1.50E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52725 PF04770 ZF-HD_dimer 4.40E-28 No_clan Cam TF