Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0871 ATGGATCCAGAGACGCAAAATGATCAGTCAATGCAAGAATACCATTTAATCTCTGATGGGAAGGTAATATTGGAGGGGAAATCTAACTTCGCAAAAAAGCAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAATTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCGCATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGAAGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATAGCATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGTGAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGCGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCCTTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCAGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCGCACGAGGGCAATGATATGTATACATTGTCCCTCAAGGACTCATTAGCAGCCGTATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCGCATACAAAACAAGTTCCGTAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCAAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTTAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGATATAAAGGTGAAAGATGGTGTTCTAGACAATGCAGATGAAACAGATGACTTTGATGACCTAATTGACATTAAAGCCCTATTGGATGAAGATGCTTTCACTCCTACTGCATCGGTGTAA 2004 42.66 MDPETQNDQSMQEYHLISDGKVILEGKSNFAKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFRIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPAEVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHSIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRELLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWALLPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAVSNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIRIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRQNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQDIKVKDGVLDNADETDDFDDLIDIKALLDEDAFTPTASV 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19560520 19564297 - CaPI482276_10g008710.1 Cam10g0871 137534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0871 667 Gene3D - 490 539 - -
Cam10g0871 667 SUPERFAMILY Ankyrin repeat 274 382 IPR036770 -
Cam10g0871 667 ProSiteProfiles IQ motif profile. 516 539 - -
Cam10g0871 667 ProSiteProfiles IQ motif profile. 492 521 - -
Cam10g0871 667 SMART ANK_2a 321 350 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 SMART ANK_2a 360 389 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 27 626 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam10g0871 667 Pfam IQ calmodulin-binding motif 517 536 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 Pfam IQ calmodulin-binding motif 493 512 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 SUPERFAMILY E set domains 88 174 IPR014756 -
Cam10g0871 667 Gene3D - 212 384 IPR036770 -
Cam10g0871 667 Gene3D Immunoglobulins 81 177 IPR013783 -
Cam10g0871 667 SMART iq_5 491 513 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 SMART iq_5 514 536 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 ProSiteProfiles Ankyrin repeat region circular profile. 321 346 - -
Cam10g0871 667 Pfam Ankyrin repeats (3 copies) 294 383 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 FunFam Calmodulin-binding transcription activator 2 491 539 - -
Cam10g0871 667 FunFam Calmodulin-binding transcription activator 2 81 177 - -
Cam10g0871 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 542 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0871 K21596 - - vvi:100247418 784.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0007 Cam-Chr6:1867352 Cam10g0871 Cam-Chr10:19560520 5.30E-107 dispersed
Cam06g0464 Cam-Chr6:6760119 Cam10g0871 Cam-Chr10:19560520 2.90E-79 dispersed
Cam09g1648 Cam-Chr9:28137002 Cam10g0871 Cam-Chr10:19560520 9.70E-146 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38