Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0871 ATGGATCCAGAGACGCAAAATGATCAGTCAATGCAAGAATACCATTTAATCTCTGATGGGAAGGTAATATTGGAGGGGAAATCTAACTTCGCAAAAAAGCAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAATTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCGCATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGAAGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATAGCATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGTGAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGCGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCCTTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCAGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCGCACGAGGGCAATGATATGTATACATTGTCCCTCAAGGACTCATTAGCAGCCGTATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCGCATACAAAACAAGTTCCGTAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCAAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTTAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGATATAAAGGTGAAAGATGGTGTTCTAGACAATGCAGATGAAACAGATGACTTTGATGACCTAATTGACATTAAAGCCCTATTGGATGAAGATGCTTTCACTCCTACTGCATCGGTGTAA 2004 42.66 MDPETQNDQSMQEYHLISDGKVILEGKSNFAKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFRIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPAEVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHSIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRELLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWALLPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAVSNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIRIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRQNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQDIKVKDGVLDNADETDDFDDLIDIKALLDEDAFTPTASV 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19560520 19564297 - CaPI482276_10g008710.1 Cam10g0871 137534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0871 667 Gene3D - 490 539 - -
Cam10g0871 667 SUPERFAMILY Ankyrin repeat 274 382 IPR036770 -
Cam10g0871 667 ProSiteProfiles IQ motif profile. 516 539 - -
Cam10g0871 667 ProSiteProfiles IQ motif profile. 492 521 - -
Cam10g0871 667 SMART ANK_2a 321 350 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 SMART ANK_2a 360 389 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 27 626 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam10g0871 667 Pfam IQ calmodulin-binding motif 517 536 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 Pfam IQ calmodulin-binding motif 493 512 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 SUPERFAMILY E set domains 88 174 IPR014756 -
Cam10g0871 667 Gene3D - 212 384 IPR036770 -
Cam10g0871 667 Gene3D Immunoglobulins 81 177 IPR013783 -
Cam10g0871 667 SMART iq_5 491 513 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 SMART iq_5 514 536 IPR000048 GO:0005515(InterPro)
Cam10g0871 667 ProSiteProfiles Ankyrin repeat region circular profile. 321 346 - -
Cam10g0871 667 Pfam Ankyrin repeats (3 copies) 294 383 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515(InterPro)
Cam10g0871 667 FunFam Calmodulin-binding transcription activator 2 491 539 - -
Cam10g0871 667 FunFam Calmodulin-binding transcription activator 2 81 177 - -
Cam10g0871 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 542 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0007 Cam-Chr6:1867352 Cam10g0871 Cam-Chr10:19560520 5.30E-107 dispersed
Cam06g0464 Cam-Chr6:6760119 Cam10g0871 Cam-Chr10:19560520 2.90E-79 dispersed
Cam09g1648 Cam-Chr9:28137002 Cam10g0871 Cam-Chr10:19560520 9.70E-146 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0871 K21596 - vvi:100247418 784.252