Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0872 ATGAAACGATTTGCTAACAAGCAATCAACCTTATTTGATCATCAGAATCAGATCAATGGCATTGAAAATCAGTTGCTGTTAAGATGTGGAGAGATTAAGCGTTGGGAATCCGATCAATGCACCAACTATTCTCAATTTTCCTTCAAACCAGTCGTCGGCAATGCTTTGACTTTATTCTACTCAAATTCAGCGTCTTCTTCCATGATTAATTTCGCAATTGAGCTGCAATTGTCTCTCCTGCGAGTTTTGGAATGTCCGAAATTCGCTCATCTCCGATATACACTAGATATTGAACGAATCCTTTTAGAAGCAAAACATCGATGGCTACGCCCGGCTGAAATATGTGAAATTCTCAAAAACTACGATAAATTTTCTATTGCTTCAGAGCCTGCTAATATGCCTCCAAGTGGTTCACTTTTTCTTTATGATCGAAAGGTGGTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAGAAAGGAAAGGCGGTAAAGGAAGCTCACGAGAGGCTCAAGGCTGGAAGTGTGTATGTGCTGAATTGCTACTATGCACATGGGGAAGAAAATGAAAATTTTCAGAGGCGCACTTATTGGATGCTGGAAGAGGATCTATCAAACATTGTTCTTGTCCACTATCGGGAAGTGCAGAGCAGTAGAGGAAATTTCAATCGTAATAGGGGGACTGATGAAGCTGCTCTATTCTCTCGAGAATTTGAAGATACTAAGAACCATCCAGAAATGGGCGCTTCTAACTCCTCTAGTTTTCATCCATCTAATTATAAAATGCTTTCACAAACTGCTGAAATTAGCCTGAACAGTGCCCAGGTATCAGAATATGAAGATGCTGAATCAGAATACGGTAACCGAGAAAGTACTGTTTTCCATTCTTTTCTTGGATTACAACAGCTGAAAATGGAGAGTAATAGTGCTGATCTCTGTGATTCGAAGTATCCTATATCATTATCAGATATTTATCAAGAAGACTTTACAGCCTTTGGTGGGAATGGCTTTCCGACTACATCGGATAGAAGTAAATATAGCAATAGTGTTGGATTCATTTACGAGCCCCACAGAAAACTTTGTTTTTCTTCTGAAAACGTCTTGGAAAGTGGTACTACTGGAATATATTCATCCCATCTGCAGCCATCATTTTTTACATCTCAACCTCAAATTTTAGACGATGTTCCAAAACAAGGTGATGAAATAGTGGGACTGCTCTCCTCTGATAAATGTAAAAGGACAGTGTTTAATAATCATCTACATTCCCAGGAAGATTGTCAGGAATTACTTGTGAAATCATCTGGCCAACGAGCCTCTGATCTACCCAGGTCCATAGCCACTAGCACTTCACATTTATAA 1362 39.43 MKRFANKQSTLFDHQNQINGIENQLLLRCGEIKRWESDQCTNYSQFSFKPVVGNALTLFYSNSASSSMINFAIELQLSLLRVLECPKFAHLRYTLDIERILLEAKHRWLRPAEICEILKNYDKFSIASEPANMPPSGSLFLYDRKVVRYFRKDGHNWRKKKGKAVKEAHERLKAGSVYVLNCYYAHGEENENFQRRTYWMLEEDLSNIVLVHYREVQSSRGNFNRNRGTDEAALFSREFEDTKNHPEMGASNSSSFHPSNYKMLSQTAEISLNSAQVSEYEDAESEYGNRESTVFHSFLGLQQLKMESNSADLCDSKYPISLSDIYQEDFTAFGGNGFPTTSDRSKYSNSVGFIYEPHRKLCFSSENVLESGTTGIYSSHLQPSFFTSQPQILDDVPKQGDEIVGLLSSDKCKRTVFNNHLHSQEDCQELLVKSSGQRASDLPRSIATSTSHL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19570489 19576428 - CaPI482276_10g008720.1 Cam10g0872 137535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0872 453 ProSiteProfiles CG-1 DNA-binding domain profile. 97 222 IPR005559 GO:0003677(InterPro)
Cam10g0872 453 Pfam CG-1 domain 103 215 IPR005559 GO:0003677(InterPro)
Cam10g0872 453 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 96 404 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam10g0872 453 SMART CG_1_2 100 217 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0872 K21596 - - cit:102621892 363.229
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38