Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0887 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTCGCTGATCCTGGCAACAGTGTAGCATCGCCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGACCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTACATTGTCTAACACGCAAGTTAGAACTCCAACCTCGCCGCCTCTTCCTGGGATAATAAAAGCTCGCGTCAAGCACGAACATTAA 1044 47.7 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPLPTLSNTQVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19931464 19935670 - CaPI482276_10g008870.1 Cam10g0887 137550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0887 347 MobiDBLite consensus disorder prediction 1 95 - -
Cam10g0887 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam10g0887 347 PANTHER TRANSCRIPTION FACTOR DP 24 319 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cam10g0887 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cam10g0887 347 MobiDBLite consensus disorder prediction 22 60 - -
Cam10g0887 347 FunFam Transcription factor-like protein DPB 87 180 - -
Cam10g0887 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam10g0887 347 FunFam Transcription factor-like protein DPB 181 306 - -
Cam10g0887 347 Gene3D - 88 180 IPR036388 -
Cam10g0887 347 Coils Coil 191 225 - -
Cam10g0887 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cam10g0887 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Cam10g0887 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cam10g0887 347 SMART DP_2 182 345 IPR014889 -
Cam10g0887 347 CDD DP_DD 180 283 IPR014889 -
Cam10g0887 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52726 PF08781 DP 4.00E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0887 K04683 - csv:101216863 665.996