Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0887 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTCGCTGATCCTGGCAACAGTGTAGCATCGCCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGACCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTACATTGTCTAACACGCAAGTTAGAACTCCAACCTCGCCGCCTCTTCCTGGGATAATAAAAGCTCGCGTCAAGCACGAACATTAA 1044 47.7 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPLPTLSNTQVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19931464 19935670 - CaPI482276_10g008870.1 Cam10g0887 137550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0887 347 MobiDBLite consensus disorder prediction 1 95 - -
Cam10g0887 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam10g0887 347 PANTHER TRANSCRIPTION FACTOR DP 24 319 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cam10g0887 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cam10g0887 347 MobiDBLite consensus disorder prediction 22 60 - -
Cam10g0887 347 FunFam Transcription factor-like protein DPB 87 180 - -
Cam10g0887 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam10g0887 347 FunFam Transcription factor-like protein DPB 181 306 - -
Cam10g0887 347 Gene3D - 88 180 IPR036388 -
Cam10g0887 347 Coils Coil 191 225 - -
Cam10g0887 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cam10g0887 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Cam10g0887 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cam10g0887 347 SMART DP_2 182 345 IPR014889 -
Cam10g0887 347 CDD DP_DD 180 283 IPR014889 -
Cam10g0887 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0887 K04683 - - csv:101216863 665.996
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1461 . 580 934 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
Cam10g0887 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cam02g2314 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 4.0e-120 428.7
Cam04g1063 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 5.3e-120 428.3
Cam02g2314 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 2.9e-115 412.5
Cam04g1063 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 9.3e-98 354.4
Cam08g1910 . 154 408 E2F-DP Transcription Factor Family AT1G47870 54.1 6.1e-66 248.4
Cam02g2314 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cam10g0887 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cam02g2314 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 2.9e-115 412.5
Cam04g1063 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 9.3e-98 354.4
Cam02g2314 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 4.0e-120 428.7
Cam04g1063 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 5.3e-120 428.3
Cam08g1910 . 154 408 E2F-DP Transcription Factor Family AT1G47870 54.1 6.1e-66 248.4
Cam02g2314 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cam01g1461 . 580 934 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52726 PF08781 DP 4.00E-41 No_clan Cam TF