Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0890 ATGTCATCGGAGAATTCATCCGAAGAACCGGCCATAGACAGCCGTAGTCGCCGATCAATCAGTGCAGTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAATTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGCACCAGTGGTACGGGTGCTGCTAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACCATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCCGGTGAGATAG 1737 42.83 MSSENSSEEPAIDSRSRRSISAVERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGAANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGSGSSLNVSGSQLEAQERFLQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSAPSSSSSDSHRPGETESPVR 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19980032 19988398 + CaPI482276_10g008900.1 Cam10g0890 137553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0890 578 PANTHER RING ZINC FINGER PROTEIN 18 362 IPR050731 -
Cam10g0890 578 SMART ring_2 317 354 IPR001841 -
Cam10g0890 578 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 289 364 - -
Cam10g0890 578 Pfam Ring finger domain 316 355 IPR001841 -
Cam10g0890 578 MobiDBLite consensus disorder prediction 365 400 - -
Cam10g0890 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 360 IPR013083 -
Cam10g0890 578 MobiDBLite consensus disorder prediction 534 578 - -
Cam10g0890 578 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Cam10g0890 578 MobiDBLite consensus disorder prediction 537 551 - -
Cam10g0890 578 SUPERFAMILY RING/U-box 297 362 - -
Cam10g0890 578 CDD RING-H2_synoviolin 314 355 - -
Cam10g0890 578 MobiDBLite consensus disorder prediction 371 400 - -
Cam10g0890 578 MobiDBLite consensus disorder prediction 552 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1349 Cam-Chr9:18428139 Cam10g0890 Cam-Chr10:19980032 1.20E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0890 K10601 - csv:101215351 966.452