Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0891 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCGTTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCGGACCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTTAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGTCGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGTAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACCGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 45.22 MSVMLGSCSSSLWIVFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSDLGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20022795 20030862 + CaPI482276_10g008910.1 Cam10g0891 137554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0891 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Cam10g0891 613 SUPERFAMILY L domain-like 28 203 - -
Cam10g0891 613 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cam10g0891 613 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cam10g0891 613 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cam10g0891 613 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cam10g0891 613 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cam10g0891 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cam10g0891 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0891 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Cam10g0891 613 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0891 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Cam10g0891 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cam10g0891 613 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Cam10g0891 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cam10g0891 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cam10g0891 613 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cam10g0891 613 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Cam10g0891 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0891 613 MobiDBLite consensus disorder prediction 580 613 - -
Cam10g0891 613 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0706 Cam-Chr2:8349457 Cam10g0891 Cam-Chr10:20022795 5.80E-31 dispersed
Cam06g0047 Cam-Chr6:2325378 Cam10g0891 Cam-Chr10:20022795 1.80E-30 dispersed
Cam08g0748 Cam-Chr8:7364670 Cam10g0891 Cam-Chr10:20022795 1.70E-227 dispersed
Cam09g1685 Cam-Chr9:29364832 Cam10g0891 Cam-Chr10:20022795 6.00E-211 dispersed
Cam10g0891 Cam-Chr10:20022795 Cam11g0535 Cam-Chr11:6812927 9.90E-132 dispersed
Cam10g0891 Cam-Chr10:20022795 Cam07g1742 Cam-Chr7:32128257 1.10E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85489 PF00069 Pkinase 2.30E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0891 K13416 - csv:101216389 1127.85