Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0919 CGATGGAAAGACCTCCAAGCTTTTGCAGCCATCGACAACCATGTGAAACCCTATACCACAACGTTTCTTGGTCCTGCTTCCAAAGTCCTCTCCATCATCAAACCTTCTAAACTCTATCTAACCACCAACCGCTTCGTCCGAGATGGAGCTATCAGATCTTCAAATTCTAATGTCGATGTCGATGTTACCATTGCCAACGATACCATCTTTGGCATCAATGGCCAGCCAATATTTTCGGTTGATGAGGCTGACTTGGACCGTCCGACGGAAGGGTTTTCGTCCATTGAGGAAGCTATTGAAGATGTTCGGAAGGGAAAGATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCGGCTGAGGCGGTGACGACAGAGGCGATGGCTTTCATTGTAAAGCATGGAACGGGGATTGTTTGTGTGGGGATGAAAGGAGAAGATTTAGAGAGGTTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTCTCTACTGCTTTTACCATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGGTGGCATTGGCATCAAAACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCCCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTGGATCTAGCAGAGCTTGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACCACGACGATGGCTCCATGGCTAGGCTCCCAAAGCTTCGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGGAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAGATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATACTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGCGAAGAGATCTTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGGGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCTAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTATACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGCTGAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTAGAATTCAATGGTGTGTTAAGTGCTCTAATGAATGTCAATAAAAAATAA 1527 45.06 RWKDLQAFAAIDNHVKPYTTTFLGPASKVLSIIKPSKLYLTTNRFVRDGAIRSSNSNVDVDVTIANDTIFGINGQPIFSVDEADLDRPTEGFSSIEEAIEDVRKGKMVVVVDDEDRENEGDLIMAAEAVTTEAMAFIVKHGTGIVCVGMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVVALASKHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDHDDGSMARLPKLRQFAQHHSLKIISIADLIRYRRKREKLIERIGDPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGEEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGGKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNKK 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20729377 20735055 + CaPI482276_10g009190.1 Cam10g0919 137582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0919 508 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 91 489 IPR016299 GO:0009231(InterPro)
Cam10g0919 508 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 90 295 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 Gene3D DHBP synthase 81 298 - -
Cam10g0919 508 CDD GTP_cyclohydro2 297 490 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 SUPERFAMILY YrdC/RibB 91 295 IPR017945 -
Cam10g0919 508 PANTHER GTP CYCLOHYDROLASE II-RELATED 92 489 - GO:0008686(PANTHER)|GO:0009231(PANTHER)|GO:0009507(PANTHER)
Cam10g0919 508 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 96 290 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 SUPERFAMILY RibA-like 298 469 IPR036144 -
Cam10g0919 508 NCBIfam GTP cyclohydrolase II 305 489 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 83 297 - -
Cam10g0919 508 Hamap GTP cyclohydrolase-2 [ribA]. 296 493 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 Gene3D GTP cyclohydrolase II 299 470 IPR036144 -
Cam10g0919 508 Pfam GTP cyclohydrolase II 305 467 IPR032677 -
Cam10g0919 508 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 92 291 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cam10g0919 508 FunFam Riboflavin biosynthesis protein RibBA 300 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0919 K14652 - - csv:101222456 728.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0919 Cam-Chr10:20729377 Cam10g0920 Cam-Chr10:20760555 1.80E-179 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99