Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0941 ATGGTAAGGGCAAGAATCACTCAATCCAATGGCAAAAAAGGATGTGATTGGAAATACACGAGGTGGAAAATAAATTTTGGGAGGGAAAAAATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGATGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA 753 38.65 MVRARITQSNGKKGCDWKYTRWKINFGREKMTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIDGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21328192 21336326 + CaPI482276_10g009410.1 Cam10g0941 137604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0941 250 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 MobiDBLite consensus disorder prediction 218 242 - -
Cam10g0941 250 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam10g0941 250 SMART madsneu2 31 90 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 Pfam K-box region 118 201 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam10g0941 250 SUPERFAMILY SRF-like 32 111 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 Coils Coil 179 213 - -
Cam10g0941 250 Gene3D - 45 138 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 Coils Coil 153 173 - -
Cam10g0941 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 232 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam10g0941 250 MobiDBLite consensus disorder prediction 216 250 - -
Cam10g0941 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0941 250 CDD MADS_MEF2_like 33 99 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2501 Cam-Chr1:36668099 Cam10g0941 Cam-Chr10:21328192 9.50E-12 dispersed
Cam08g1627 Cam-Chr8:22477201 Cam10g0941 Cam-Chr10:21328192 1.20E-45 dispersed
Cam10g0941 Cam-Chr10:21328192 Cam11g1624 Cam-Chr11:29002783 5.50E-20 dispersed
Cam09g1583 Cam-Chr9:26809522 Cam10g0941 Cam-Chr10:21328192 2.00E-22 transposed
Cam01g1883 Cam-Chr1:32315972 Cam10g0941 Cam-Chr10:21328192 2.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52727 PF01486 K-box 8.20E-16 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0941 - - - 0.0