Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0956 ATGACAATCAGTGGCACCGTCGCCTTTAATATTGATTTTCGGATTTTATCTTCCACTGGTCAAACTCATACTCCATTTCTTTCAAAACCCTTCAATTCTCTCCTCTCCCCCACCTCCATTTCCACCTCAATTCACCCTCCTCTTGCAGCTCGTTGCTCCTCCTCCTCCTCCATCGCTTCTTTTGATATGGATAATGGTGCAGGTCTCAGTTTGTATCCATTACATCGGTGCAAAACAATTCACCTGGTCAGGCATGCACAGGGGATCCACAATGTTGATGGAGATAAGAGTTATAAAGCATATATGCGTCCTGAGTTTTTTGATGCTCACATTACTCAGCTTGGATGGCAGCAGATTGATAATTTGCGCAAGCATGTTCATGAATCTGGTCTTTCCAGGAAGATTGATTTGGTTGTAACGTCCCCTTTGCTCAGGACTCTACAAACCGCTGTTGGAGTATTTGGTGGAGAAGGCTATACAGCTGGAATGGACGTGCTGCCCCTAATGATTGCAAATGCAGGCAATAGTGCACGAGCTGCAATCTCAAGTCTAAACTGCCCACCTATTGCGGCTGTTGAGCTTTGTCGTGAACATTTGGGAGTTCATCCTTGTGATAAGAGGAGAAACATCAGTGACTATCAATTCCTCTTTCCGGCAGTTGATTTTTCACTGGCAAAAAGTGATGAGGATGTATTGTGGAAGGCTGACGTTAGAGAGACAAAGGAAGAGCTGGCAGCCAGAGGATTGCAGTTCCTGAATTGGTTGTGGACAAGGAAGGAGAAGGAGATAGCCGTTGTTACACATAGTGGATTTTTATTTCATACCCTAACTGCTTTTGGAAATGACTGCCACCCTTTGGTGAAGAAGGAAATATGCAAACACTTTGCAAATTGCGAGCTTCGATCTATTGTCATAGTTGATAGAAGTATGGTCGGGTCGGATTCCTCTCCAACTAATTATCCTGGAAAGGTACCTCCGGGGCTGGATATCCCTAGTGATGCCGTGAATGACAACAGTGTGAAGGAAGACAAACAACCAGTCGATTCCGAACCAAAGGAACATGAAAATATATGGGTTGAGATCCTGGCCGTCCATGCCAGGTCATTTGGTCAATTCACCGGCACGGGAGGGAGAGTGTACATCGTTGGATTGCTCCGAGGGGCAACGGTCGCGGTACGGAAGAAGGATTCATGGATCGATGATTCTCCGGCTGTGACTCAATCAGCGTCAGATGATGCCTCGTCGATTAATCATCATCGCAGATTATCCAACGGCATCGATTTTAGTCAATACGTGAGCTTCAACGTTTCATCGTGTTCGAGGAAGGAGCTGATCGAGCTGAAAACAAAGTTAATTTCCGAGCTAGAACAGATTCGGCAATTGAAAAGTCGCATCAATTCAGGTGAACTACATTCCAGACCAACACACCAGAAAAAATCGTCAAAAACCTCAGGAGCCAAGCGGCCTTTGCCAACGTCGAGCAACGGTATGGAGTTGAAGCGGTCTAATTCAGAAAACGGAAATCTGATGAAGACTTGCTCGCAGATTTTGACAAAACTCATGAAGCACAAACATGGCTGGATCTTCAACAAGCCGGTCGATGTGGTTGGGATGGGCCTTCACGATTACTATGACATCGTCAAGCGTCCTATGGATTTAGGATCCGTGAAAGCCAAGTTGAGCAAGGATGCATATGAATCACCGTTCGATTTTGCTTCCGACGTGAGGTTGACCTTCAAGAACGCGATGACCTACAATCCCAAGGGCCACGATGTGCACGCCATGGCAGAACAATTACTAATAAGATTTGAGGAATTGTTTCGACCTGTGGGTGAACTGCTCGAAGAAGAAGATCGGCGGTTCCGTGGCTACCAGGAAGAGTTGCCAGCGAGTTCATGGAATCACTCAGAGGCTGAAAGAACGGTGAAGAAGGATAATACCCAGAAGCAAATTGTGAAGAAGACAGAGCCAATGAAAGCTCCGTCAAGCTCTTCTAACCCGCCTATGATGCAGTCGCCTGTTAAAACTCCCTCACCTCTACGAGCACCGCCTGTAAAGCCGTTGAAGCAGCCGAAACCAAGAGCTAAAGATCCTAATAAGAGAGAAATGACTCTTGAAGAGAAGCACAAGTTGGGAATTGGTTTGCAGAGTTTGCCACCAGAGAAAATGGAACAAGTAGTGCAAATCATAAAGAAGAGAAATGGTCACTTGAAACAGGATGGGGATGAGATTGAGCTCGACATTGAAGCTGTAGATACAGAAACACTTTGGGAGCTCGATCGATTAGTCACAAACTGGAAGAAGATGATGAGCAAGATCAAACGACAGGCTCTAATCACCGCAGCATCCATCAAACCCAATGGGGTTTTACCTATCCCTGAGAAAATTGAAGTGGGTTCCGAAACGAAAAAGCAACGGAGAGGGGAGGCTGGTGAGGAAGATGTGGACATCGGCGATGAAATGCCTGCAAGCAATTTTCCACCAGTGGAGATCGAGAAAGATGCCGGGGGAGGCCATGCTAGCAGTAGTTCCAGCGGCTCCAGTAGTTCAAGCAGCGATGATTCTTCCTCTTCCAGTGATTCGGATTCCGAAGGCAGTTCTTCTGGGAGCGATTCCGATGACAATGCACAATGA 2634 46.43 MTISGTVAFNIDFRILSSTGQTHTPFLSKPFNSLLSPTSISTSIHPPLAARCSSSSSIASFDMDNGAGLSLYPLHRCKTIHLVRHAQGIHNVDGDKSYKAYMRPEFFDAHITQLGWQQIDNLRKHVHESGLSRKIDLVVTSPLLRTLQTAVGVFGGEGYTAGMDVLPLMIANAGNSARAAISSLNCPPIAAVELCREHLGVHPCDKRRNISDYQFLFPAVDFSLAKSDEDVLWKADVRETKEELAARGLQFLNWLWTRKEKEIAVVTHSGFLFHTLTAFGNDCHPLVKKEICKHFANCELRSIVIVDRSMVGSDSSPTNYPGKVPPGLDIPSDAVNDNSVKEDKQPVDSEPKEHENIWVEILAVHARSFGQFTGTGGRVYIVGLLRGATVAVRKKDSWIDDSPAVTQSASDDASSINHHRRLSNGIDFSQYVSFNVSSCSRKELIELKTKLISELEQIRQLKSRINSGELHSRPTHQKKSSKTSGAKRPLPTSSNGMELKRSNSENGNLMKTCSQILTKLMKHKHGWIFNKPVDVVGMGLHDYYDIVKRPMDLGSVKAKLSKDAYESPFDFASDVRLTFKNAMTYNPKGHDVHAMAEQLLIRFEELFRPVGELLEEEDRRFRGYQEELPASSWNHSEAERTVKKDNTQKQIVKKTEPMKAPSSSSNPPMMQSPVKTPSPLRAPPVKPLKQPKPRAKDPNKREMTLEEKHKLGIGLQSLPPEKMEQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALITAASIKPNGVLPIPEKIEVGSETKKQRRGEAGEEDVDIGDEMPASNFPPVEIEKDAGGGHASSSSSGSSSSSSDDSSSSSDSDSEGSSSGSDSDDNAQ 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21550370 21561032 + CaPI482276_10g009560.1 Cam10g0956 137619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0956 877 CDD Bromo_plant1 509 605 IPR037377 -
Cam10g0956 877 ProSiteProfiles Bromodomain profile. 521 593 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 MobiDBLite consensus disorder prediction 672 689 - -
Cam10g0956 877 MobiDBLite consensus disorder prediction 465 506 - -
Cam10g0956 877 FunFam Phosphoglycerate mutase-like protein 1 74 321 - -
Cam10g0956 877 MobiDBLite consensus disorder prediction 838 877 - -
Cam10g0956 877 Gene3D - 74 323 IPR029033 -
Cam10g0956 877 MobiDBLite consensus disorder prediction 631 701 - -
Cam10g0956 877 SUPERFAMILY Phosphoglycerate mutase-like 78 306 IPR029033 -
Cam10g0956 877 MobiDBLite consensus disorder prediction 795 877 - -
Cam10g0956 877 SMART PGAM_5 79 275 IPR013078 -
Cam10g0956 877 CDD HP_PGM_like 79 150 IPR013078 -
Cam10g0956 877 Coils Coil 441 464 - -
Cam10g0956 877 PANTHER OSJNBA0053K19.4 PROTEIN 356 872 - -
Cam10g0956 877 Gene3D - 468 626 IPR036427 GO:0005515(InterPro)
Cam10g0956 877 SMART bromo_6 502 612 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 ProSiteProfiles NET domain profile. 693 774 IPR027353 -
Cam10g0956 877 MobiDBLite consensus disorder prediction 484 506 - -
Cam10g0956 877 MobiDBLite consensus disorder prediction 637 652 - -
Cam10g0956 877 Gene3D - 696 773 IPR038336 -
Cam10g0956 877 MobiDBLite consensus disorder prediction 657 671 - -
Cam10g0956 877 MobiDBLite consensus disorder prediction 797 813 - -
Cam10g0956 877 Pfam Bromodomain 513 597 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 MobiDBLite consensus disorder prediction 312 351 - -
Cam10g0956 877 SUPERFAMILY Bromodomain 504 614 IPR036427 GO:0005515(InterPro)
Cam10g0956 877 PRINTS Bromodomain signature 574 593 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 PRINTS Bromodomain signature 524 537 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 PRINTS Bromodomain signature 540 556 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 PRINTS Bromodomain signature 556 574 IPR001487 GO:0005515(InterPro)
Cam10g0956 877 MobiDBLite consensus disorder prediction 336 351 - -
Cam10g0956 877 Pfam Bromodomain extra-terminal - transcription regulation 702 764 IPR027353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1466 Cam-Chr5:18039776 Cam10g0956 Cam-Chr10:21550370 6.10E-38 dispersed
Cam06g1918 Cam-Chr6:30132141 Cam10g0956 Cam-Chr10:21550370 2.70E-48 dispersed
Cam09g1118 Cam-Chr9:11592140 Cam10g0956 Cam-Chr10:21550370 9.00E-60 dispersed
Cam09g1535 Cam-Chr9:25723042 Cam10g0956 Cam-Chr10:21550370 2.50E-129 dispersed
Cam09g2090 Cam-Chr9:35435596 Cam10g0956 Cam-Chr10:21550370 8.70E-28 dispersed
Cam10g0956 Cam-Chr10:21550370 Cam11g1500 Cam-Chr11:27831124 8.90E-118 dispersed
Cam10g0956 Cam-Chr10:21550370 Cam02g1860 Cam-Chr2:31626669 4.10E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80