Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0965 ATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATGACATATGA 408 39.95 MGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPVPGIKLGYVLAICVHDI 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21688410 21689623 - CaPI482276_10g009650.1 Cam10g0965 137628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0965 135 ProSiteProfiles K-box domain profile. 1 66 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam10g0965 135 Coils Coil 53 73 - -
Cam10g0965 135 Pfam K-box region 1 60 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0965 K09264 - - csv:101203098 204.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0965 Cam-Chr10:21688410 Cam11g1495 Cam-Chr11:27771018 4.70E-18 dispersed
Cam01g1867 Cam-Chr1:32204453 Cam10g0965 Cam-Chr10:21688410 4.50E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g838 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00943 Cam10g0965 Cec10g1000 Cco10g0961 Clacu10g0988 Cmu10g1771 Cre10g1145 . . . Cone10ag1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00982 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112