Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0979 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTGTGTGGTGCTGAGATTGCCATCATCGTCTTCTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCTTGCGTTGAGGCTCTCATCGAACGCTTTGTGACACGAAACCCTCCGCCGAGCTCCGGTACGCTGCAGCTAATCGAAGCCCACCGGAATGCCAATGTTCGAGAACTGAATGCACAACTTACTCAAGTGCTGAACCAGCTTGAAATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCATCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 663 50.68 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPSTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21887853 21889038 - CaPI482276_10g009790.1 Cam10g0979 137642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0979 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 Coils Coil 138 165 - -
Cam10g0979 220 Gene3D - 83 175 - -
Cam10g0979 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 Coils Coil 93 130 - -
Cam10g0979 220 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam10g0979 220 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam10g0979 220 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Cam10g0979 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0745 Cam-Chr3:8334603 Cam10g0979 Cam-Chr10:21887853 1.70E-22 dispersed
Cam06g0964 Cam-Chr6:14635154 Cam10g0979 Cam-Chr10:21887853 8.60E-30 dispersed
Cam10g0979 Cam-Chr10:21887853 Cam01g1883 Cam-Chr1:32315972 1.50E-13 dispersed
Cam10g0979 Cam-Chr10:21887853 Cam01g2501 Cam-Chr1:36668099 2.60E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52728 PF00319 SRF-TF 3.50E-24 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0979 - - - 0.0