Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0998 ATGCCGCTGGCAGCTGAATCCGTGCCTGATAAAATTTGTCTTCCTGGAAAAATATTAAGGAGGCTCCAAAAACCTAAATCATACCATTATTCCCTTTGCATAACTAAGTTGGCCTTGGGCAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGATGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTGGGAAAAAAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCATTTCGAAAGCTCAAATCGATCTCGAAATAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 1086 44.29 MPLAAESVPDKICLPGKILRRLQKPKSYHYSLCITKLALGKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCIISKAQIDLEIAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22231870 22238987 + CaPI482276_10g009980.1 Cam10g0998 137661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0998 361 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 180 252 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam10g0998 361 SMART sant 38 93 IPR001005 -
Cam10g0998 361 SUPERFAMILY Homeodomain-like 39 104 IPR009057 -
Cam10g0998 361 FunFam Telomere repeat-binding factor 1 38 92 - -
Cam10g0998 361 Pfam linker histone H1 and H5 family 188 245 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam10g0998 361 Coils Coil 154 176 - -
Cam10g0998 361 Coils Coil 304 341 - -
Cam10g0998 361 ProSiteProfiles Myb-like domain profile. 40 91 IPR001005 -
Cam10g0998 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 67 IPR017930 -
Cam10g0998 361 SUPERFAMILY Winged helix DNA-binding domain 187 258 IPR036390 -
Cam10g0998 361 MobiDBLite consensus disorder prediction 126 172 - -
Cam10g0998 361 PANTHER SINGLE MYB HISTONE 4 41 355 IPR044597 GO:0003691(InterPro)
Cam10g0998 361 Pfam Myb-like DNA-binding domain 40 90 IPR001005 -
Cam10g0998 361 CDD SANT_TRF 41 90 - -
Cam10g0998 361 FunFam Telomere repeat-binding factor 1 42 120 - -
Cam10g0998 361 SMART h15plus2 182 247 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam10g0998 361 Gene3D - 185 260 IPR036388 -
Cam10g0998 361 Gene3D - 42 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0067 Cam-Chr7:1809212 Cam10g0998 Cam-Chr10:22231870 2.90E-06 dispersed
Cam10g0998 Cam-Chr10:22231870 Cam02g1970 Cam-Chr2:32824691 1.30E-06 dispersed
Cam01g1808 Cam-Chr1:31625375 Cam10g0998 Cam-Chr10:22231870 6.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52729 PF00538 Linker_histone 1.50E-07 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0998 K09422 - csv:101218411 486.108