Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1021 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGATGAAGATAACGGTTCAAATATCCGAAAAACAAGACAATGCAGGCTACAACCCTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCACATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCCAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1092 43.13 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQPSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDHIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22591753 22593489 - CaPI482276_10g010210.1 Cam10g1021 137684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1021 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cam10g1021 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Cam10g1021 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 90 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam10g1021 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Cam10g1021 363 CDD bHLH_AtIND_like 276 338 - -
Cam10g1021 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Cam10g1021 363 MobiDBLite consensus disorder prediction 161 281 - -
Cam10g1021 363 MobiDBLite consensus disorder prediction 167 185 - -
Cam10g1021 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Cam10g1021 363 MobiDBLite consensus disorder prediction 218 279 - -
Cam10g1021 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0879 Cam-Chr3:10942864 Cam10g1021 Cam-Chr10:22591753 2.10E-18 dispersed
Cam05g2254 Cam-Chr5:30716309 Cam10g1021 Cam-Chr10:22591753 1.60E-38 dispersed
Cam08g2119 Cam-Chr8:26599842 Cam10g1021 Cam-Chr10:22591753 1.70E-37 dispersed
Cam09g0035 Cam-Chr9:1317160 Cam10g1021 Cam-Chr10:22591753 1.00E-12 dispersed
Cam10g1021 Cam-Chr10:22591753 Cam11g1687 Cam-Chr11:29543656 1.80E-08 dispersed
Cam10g1021 Cam-Chr10:22591753 Cam02g0712 Cam-Chr2:8469170 1.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52730 PF00010 HLH 7.70E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1021 - - - 0.0