Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1022 ATGACAGCCGTCCCTCCTCCGGCTGCTGGCCGGGAGCTTTCAAATCCTCCCTCCGACGGCATTTCCAATCTCCGTTTCTCCAACCACAGTGATCACTTACTTGTTTCCTCTTGGGACAAGACTGTCCGCTTGTACGACGCCAGCGCCAACGTCCTCCGCGGTGAGTTCGTACATGGTGGTCCTGTCCTCGACTGTTGTTTCCACGACGATTCTTCTGGATTCAGTGCCAGTGTTGACAACACCGTCAGGAGACTTGTTTTCAACCATAATAAGGAGGACATATTAGGGAGGCATGATGCACCTGTACGGTGCGTTGAGTATTCTTATGCGGCAGGTCAATTAATTACTGGCAGTTGGGATAAAACACTGAAGTGTTGGGATCCTAGAGGTGCGAGTGGGCAGGAACATACTCTCGTTGGAACATATCCTCAGCCTGAGCGTGTTTACTCACTTTCTCTTGTGGGGAATCGTTTAGTTGTAGCAACTGCTGGAAGGCATGTTAATGTCTACGACTTGAGAAACATGTCTCAACCCGAGCAAAGAAGGGAATCCTCGTTGAAATATCAGACTCGATGTGTGCGTTGTTATCCAAATGGAACAGGCTATGCTCTTAGTTCAGTTGAAGGACGAGTTGCTATGGAGTTTTTTGATCCCTCAGAGGCCAGTCAAGCCAAAAAGTATGCATTCAAATGTCACAGAAAATCAGAGGCTGGAAGGGACATAGTCTATCCGGTCAATGCCATTGCATTCCATCCTATCTACGGTACTTTTGCAACGGGAGGTTGTGATGGGTACGTAAATGTTTGGGATGGGAACAACAAGAAGAGGCTTTATCAGTATTCAAAATATCCAACAAGTATTGCAGCACTGTCATTTAGTAGAGATGGGCGGCTATTAGCTGTAGCCTCAAGTTACACATTTGAAGAGGGAGATAAACCCCCTCGATTGGTTTTCATGCTAGAGTCACTTGATGGTGGTTTAGAGCCAAGAGTGAGAGAAAGTGGAGGATGTGAGTTGGGTGAAGATCCAAGCAGGAATGGGGCCAAGAAGCTTTTCAGGCATGCAAAGACATCATACCATTGCAATAATTGGGCAACATCCAAAAGGGCTCTTTCTTTGGGGGGATTGAGGAAACTTGAAGCTCACTTCTTGCTTGTCAAGATGAAGTTCATGAAACTTGGATCAAAATCTGATAGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTAGGTGAATTAGCAACAGACATCACTGTTATCGTAGGGGATGTCAAGTTTTACCTCCATAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACAGCTGCCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCGGGTGGTTCTGCAGCATTTGAGATATGTGCCAAATTCTGTTATGGGATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAGTTGAAAAGGGAAACCTCACGTACAAAATCGACGTTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCCACAAAGGCGTTAATGCCATTATCTGAGGAACTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCTGAGGAAAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGTGTGCCGAAGGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAACGAGTATAAAAAACAAAGGAATAGTCCCTAATGATGTGATTGGAGAAGCACTGAAAGCTTATGCTTACCGTTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCACTGAAGTATCAGTCAGCAGTGTCGACAATTGTCTGGCTGTTACCTGCTGAGAAAGGCTGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCGTCCATTTTCCTAGCATCTGGAGATGAGACCAAAGAAGAGCTCGTTCGACGAATGGGACAGCAGCTAGAGGAGGCTACAGTGAGCGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTACAAGATCATAGTAGCGAAATCGAGTCACTTGAAGAGGGAAATGAGCTTCAGGAGCCAAGAGGGCCAGGGATTTTATCGGATGCTACTAAGTTGATGGTGGCAAAATTGATTGATGGTTACCTTGCTGAAGTTGCAAAAGATCCCAACCTATCATCAGTAAAGTTCATTGATCTTGCAGAGATGGTATCTTGCATCGCTCTGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCCGCTGATGCATGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTGTTTTTTGAGCAAGTCAGGGCCTCAGCATCATCAGGCAGCAGCACTCCCGACCTACATAAAGGCATCAAGGATCTAACGAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAATCCCGAGGAAGATTGGGATGCTGTTGCCATGGCTGAGGAGCTCAAGGCTCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTACTGGTAAAGGAAGTAATGAAAGGAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATATGGCGAAAACAGCGGCTCGGATTCATCAGAGAGCCTTGGTTCTGCAAATCAGGAGGAAGCTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 3042 45.4 MTAVPPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSASVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPPRLVFMLESLDGGLEPRVRESGGCELGEDPSRNGAKKLFRHAKTSYHCNNWATSKRALSLGGLRKLEAHFLLVKMKFMKLGSKSDSFQNDGTNVRYVVGELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETVEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVITSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGCVSSSFLSKLLKASIFLASGDETKEELVRRMGQQLEEATVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQDHSSEIESLEEGNELQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLSSVKFIDLAEMVSCIALPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLHKGIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLATGKGSNERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22624053 22638315 + CaPI482276_10g010220.1 Cam10g1022 137685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1022 1013 MobiDBLite consensus disorder prediction 977 1001 - -
Cam10g1022 1013 FunFam Mitotic checkpoint protein bub3, putative 7 329 - -
Cam10g1022 1013 ProSiteProfiles NPH3 domain profile. 597 875 IPR027356 -
Cam10g1022 1013 PANTHER OS12G0117600 PROTEIN 413 936 IPR043454 -
Cam10g1022 1013 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515(InterPro)
Cam10g1022 1013 Coils Coil 915 935 - -
Cam10g1022 1013 ProSiteProfiles BTB domain profile. 416 484 IPR000210 GO:0005515(InterPro)
Cam10g1022 1013 Pfam WD domain, G-beta repeat 18 46 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 Pfam WD domain, G-beta repeat 244 270 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 Pfam WD domain, G-beta repeat 58 83 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 MobiDBLite consensus disorder prediction 894 909 - -
Cam10g1022 1013 Pfam NPH3 family 597 851 IPR027356 -
Cam10g1022 1013 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Cam10g1022 1013 Gene3D - 7 316 IPR015943 GO:0005515(InterPro)
Cam10g1022 1013 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 SMART WD40_4 135 171 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 SMART WD40_4 6 46 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 SMART WD40_4 88 127 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 SMART WD40_4 222 270 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 SMART WD40_4 49 86 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 MobiDBLite consensus disorder prediction 879 911 - -
Cam10g1022 1013 Pfam BTB/POZ domain 415 505 IPR000210 GO:0005515(InterPro)
Cam10g1022 1013 MobiDBLite consensus disorder prediction 976 1013 - -
Cam10g1022 1013 SUPERFAMILY POZ domain 409 504 IPR011333 -
Cam10g1022 1013 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515(InterPro)
Cam10g1022 1013 Gene3D Potassium Channel Kv1.1; Chain A 395 508 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1836 Cam-Chr8:24468841 Cam10g1022 Cam-Chr10:22624053 3.50E-149 dispersed
Cam10g1022 Cam-Chr10:22624053 Cam10g1994 Cam-Chr10:33838305 8.50E-88 dispersed
Cam01g1181 Cam-Chr1:18773795 Cam10g1022 Cam-Chr10:22624053 6.40E-93 transposed
Cam01g2170 Cam-Chr1:34402709 Cam10g1022 Cam-Chr10:22624053 4.80E-105 transposed
Cam01g1795 Cam-Chr1:31522023 Cam10g1022 Cam-Chr10:22624053 9.90E-221 wgd
Cam10g1022 Cam-Chr10:22624053 Cam09g0616 Cam-Chr9:6112692 7.00E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79