Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1169 | ATGATGTGGAATAATTGGATATGGGTGGTGGGTTTATTATGGTTGTTGGGATTATGGGGATGGAGAGTTGTGAATTGGGTTTGGGTTAGGCCGAAAAAGCTTGAGAAGTTCTTGAGACAGCAAGGCCTCGCCGGCAACTCTTATCGCTTTCTCTTGGGGGATACAAAGGAGATTGCGGCGGCCGTCCACCAAGCCAGATCGCAGCCGATGACCTTCTCCCATGATATTGCCCCACGCGCCACCCCTACCTCTCATACCACCATCCACAAATACGGTAAGGATTCTTTCACATGGGTTGGCACAACTCCAAGAGTGTATATAACAGAGCCTGAACAAGTGAAGATTGTTTTTTCTCAAATAAATGATATTCGTAAGACATCTTCTTTTCCCCTTAGACGAAGAGTGGGAAGTGGACTTGTCTCTCTTGAGGGTTCTAAATGGGCTAAACATAGAAAGATCATCAACCCTGCATTTCACATGGAGAAGTTGAAGGAAATGTTTCCAGCATTCTCCAAGAGTTGTGGGGACATGGTTAACAAATGGGAAAAGATGATTCCTGAAGAAGGACGTTGTGAAATAGATGTGTGGCCTGATTTGCAAAATATGGCTGCCGATGTGATTTCTAGAACTGCATTTGGAAGTAGTTACGAAGAAGGGGAAAAGATATTCCAGCTCTTGAAAGAGTGGGCTAAGCTATTGATGACATACCTAACAAAGGGAGCTTATTTCATTCCAGGGTTGAGGTATATGCCAACAAAATTAAACAAGAGAATGGGAGAGATTGATAGGAAAATACGAGATATGGTTTGGGGTATTATAAGCAAAAGACAGAATGCAATGAAGAAAGGTGAAGGTTCCAATAATGAAGATCTATTAGGCATTCTTTTAGAATCAAATGCAAATCAAATTGAAGAACAAGAAAACAAGAAAGATGTTGGAATGAGCATAGAAGAAGTAATAAGTGAATGCAGGCTTTTCTACTTTGCTGGGCAAGAAACCACAGCTGCATTGCTTGCTTGGACAATGGTTCTACTTGGTCGATACTCAGAGTGGCAAGACCGAGCAAGAGCAGAAGTCTTTGAAGTTTTTTGTGATAATAAGAAATGGGATTTTGAAGGCCTAAGTCGTCTAAGAGTAGTAACTATGATCCTAAATGAAGTCCTTAGGCTATACCCTCCTGTTGGAATGCTAGCTCGAGAGATTCACAAGGAAACAAAATTGGGCAATGTTACATTACCAGTTGGAGTATCAATAGGAATACCAATATTATCCATACACCATGACCCAAAAATATGGGGTGAAGATGCACTTGAGTTCAAACCAGAAAGATTTTCAGAAGGAATTTCCAAAGCAACAAAGAATCAAGTATGCTTTATCCCTTTTGGATGGGGTCCTCGAATTTGCCTTGGCCAAAACTTTGCGTTGATTGAAGCCAAAATAGCACTATCCATGATTTTGCAACAATTCTCATTCACACTTTCTCCAACTTATACTCATGCTCCTATTGCAAACATCACTATTCAACCACAACATGGGGCTCATCTCGTCCTTCTTAAATCACAAACTTTTGATGATTTTTGGTTTGTTCAACAATGGCCACCGGCTGTTTGTGCTCTACAATCAGGACGATGTGTAGGACAGGGATTACGATCATTCACAATTCACGGTTTGTGGCCTCAAAAAGGAGGGACCTCTATAACTAATTGTGCTGGCAATTCCTTTGATTTTACTAAGATTGCACATTTAGAAAACAATCTAAACATAGTTTGGCCGAATGTGGTGACGGGAAACAACAAATTCTTCTGGGGTCATGAATGGAACAAACATGGAATTTGCTCAGAGAACAAGTTCGACCAGGCAAGCTTCTTCCAAACTGCGATAAATATGAGGAACAATATCAACCTTCTTAGTGTCTTGAGAACTGGTGGAGTAGTACCAAACGGTGCCTCAAAAGCGAAGCAAAGAGTAGAAAGCTTAATCTCAACCCATTTTGGAAGGGATCCCATTCTTCGGTGTAAAACAGCATCAAATGGCCAAGTCTTATTGACGGAGATTGTTATGTGCTTTGATGATGATGGTACCACCCTCATACACTGCAATAAAGCAAGATCTAATTGTGCTAGGAGTTTTATTTTTTGA | 2139 | 40.86 | MMWNNWIWVVGLLWLLGLWGWRVVNWVWVRPKKLEKFLRQQGLAGNSYRFLLGDTKEIAAAVHQARSQPMTFSHDIAPRATPTSHTTIHKYGKDSFTWVGTTPRVYITEPEQVKIVFSQINDIRKTSSFPLRRRVGSGLVSLEGSKWAKHRKIINPAFHMEKLKEMFPAFSKSCGDMVNKWEKMIPEEGRCEIDVWPDLQNMAADVISRTAFGSSYEEGEKIFQLLKEWAKLLMTYLTKGAYFIPGLRYMPTKLNKRMGEIDRKIRDMVWGIISKRQNAMKKGEGSNNEDLLGILLESNANQIEEQENKKDVGMSIEEVISECRLFYFAGQETTAALLAWTMVLLGRYSEWQDRARAEVFEVFCDNKKWDFEGLSRLRVVTMILNEVLRLYPPVGMLAREIHKETKLGNVTLPVGVSIGIPILSIHHDPKIWGEDALEFKPERFSEGISKATKNQVCFIPFGWGPRICLGQNFALIEAKIALSMILQQFSFTLSPTYTHAPIANITIQPQHGAHLVLLKSQTFDDFWFVQQWPPAVCALQSGRCVGQGLRSFTIHGLWPQKGGTSITNCAGNSFDFTKIAHLENNLNIVWPNVVTGNNKFFWGHEWNKHGICSENKFDQASFFQTAINMRNNINLLSVLRTGGVVPNGASKAKQRVESLISTHFGRDPILRCKTASNGQVLLTEIVMCFDDDGTTLIHCNKARSNCARSFIF | 712 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 24927081 | 24936168 | - | CaPI482276_10g011690.1 | Cam10g1169 | 137832 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1169 | 712 | CDD | CYP72 | 82 | 516 | - | - | |
| Cam10g1169 | 712 | Gene3D | Cytochrome P450 | 27 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | Gene3D | - | 524 | 710 | IPR036430 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Cam10g1169 | 712 | ProSitePatterns | Ribonuclease T2 family histidine active site 1. | 552 | 559 | IPR018188 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Cam10g1169 | 712 | Pfam | Ribonuclease T2 family | 523 | 699 | IPR001568 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Cam10g1169 | 712 | CDD | RNase_T2_euk | 523 | 711 | IPR033697 | - | |
| Cam10g1169 | 712 | SUPERFAMILY | Cytochrome P450 | 83 | 517 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | Pfam | Cytochrome P450 | 89 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cam10g1169 | 712 | SUPERFAMILY | Ribonuclease Rh-like | 523 | 712 | IPR036430 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Cam10g1169 | 712 | FunFam | Cytochrome P450 734A1 | 28 | 521 | - | - | |
| Cam10g1169 | 712 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 16 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Cam10g1169 | 712 | ProSitePatterns | Ribonuclease T2 family histidine active site 2. | 601 | 612 | IPR033130 | - | |
| Cam10g1169 | 712 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam10g1169 | 712 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam05g2553 | Cam-Chr5:33316784 | Cam10g1169 | Cam-Chr10:24927081 | 4.30E-110 | dispersed | |
| Cam05g2626 | Cam-Chr5:33775018 | Cam10g1169 | Cam-Chr10:24927081 | 1.90E-32 | dispersed | |
| Cam07g0541 | Cam-Chr7:7909670 | Cam10g1169 | Cam-Chr10:24927081 | 1.70E-79 | dispersed | |
| Cam10g1165 | Cam-Chr10:24896751 | Cam10g1169 | Cam-Chr10:24927081 | 7.90E-99 | dispersed | |
| Cam10g1167 | Cam-Chr10:24910912 | Cam10g1169 | Cam-Chr10:24927081 | 2.60E-70 | dispersed | |
| Cam10g1169 | Cam-Chr10:24927081 | Cam11g1736 | Cam-Chr11:29965092 | 1.20E-189 | dispersed | |
| Cam10g1168 | Cam-Chr10:24916280 | Cam10g1169 | Cam-Chr10:24927081 | 7.20E-54 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1169 | - | - | - | 0.0 |