Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1180 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATTCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAACCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.13 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25138602 25139492 + CaPI482276_10g011800.1 Cam10g1180 137843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1180 296 MobiDBLite consensus disorder prediction 131 159 - -
Cam10g1180 296 MobiDBLite consensus disorder prediction 254 296 - -
Cam10g1180 296 MobiDBLite consensus disorder prediction 16 59 - -
Cam10g1180 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cam10g1180 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cam10g1180 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cam10g1180 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam10g1180 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cam10g1180 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cam10g1180 296 Gene3D - 191 259 - -
Cam10g1180 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cam10g1180 296 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1180 Cam-Chr10:25138602 Cam11g0009 Cam-Chr11:1609440 3.20E-35 dispersed
Cam04g1064 Cam-Chr4:24764467 Cam10g1180 Cam-Chr10:25138602 3.40E-32 transposed
Cam10g1180 Cam-Chr10:25138602 Cam04g1259 Cam-Chr4:26541611 5.30E-14 wgd
Cam10g1180 Cam-Chr10:25138602 Cam05g2628 Cam-Chr5:33790417 4.20E-43 wgd
Cam10g1180 Cam-Chr10:25138602 Cam06g1767 Cam-Chr6:28847832 1.20E-13 wgd
Cam10g1180 Cam-Chr10:25138602 Cam09g1872 Cam-Chr9:33294763 5.90E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52740 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1180 - - - 0.0