Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1191 ATGTCGTACAAACTCACCACGAAAACCCAAAATAAGAAGGCCGAGCCCAACACTCGAAGCCCAGCCCATGCGTTTCAGCTGAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTGTAAATTCTCTTTCACAGTTCTGCATCGTTAGGTTTCTCTCGGAGGAGGCGTTTGGTTTCTTGCCATTGCTCTCCCCTTCCCTTTCCCCACTCCAGATCTTCTTCTCTTTCATTTCCTTACCGTTTCAATCAAGTTTCCAGAGAATGTATGGTTTTGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAACGAACCATCTCCATTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACTGAGCCTCTGTCTACCTTCTTGGAGTATATCACATATGGTCACATGATAGACAATGTTGTCCTTATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAACACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGGGATGATCGAAGGAAGTTGTATTCCAATTTTGGCTTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTAATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGCCTGCGAAACCAAACCAATCACCATCATCACCGTCGATGGACCGGAATCAGAACTTTCCGACCACCATAACCGACTTGGATGAAGATTCTCTCGCTCACTGCGCTTCATTCCTCAAGCGCCACGACATCTTCAATCTCGCCAGCACCTGCAAATATCTTCAACAAGTTGCAAATTCCGACTCCATTTGGCAACGCCTTTTCAGGGAGCGATGGCAGCATCAGTTACCACCTCTTGGTTCTTCCTTAGCTTCAGGAGGAGCTAGGAATGCGTACTTTGCTAGGCTTTCCGATTTGCAACAGTGCAAGTTTGAAGATCCTTTGGTTGCTAGTATCCTCACCCAACCCGAGCCTTATGGCCCCATGCTTTTGGATAGAGATAATATATTCGTTTCTCAGGGCTCCTCAATTCAAATGGTGACTATCACCAAAAATGTTAGCACTCTTGCCACTCTGAATGATCACAATGCGCGTATCACTTGTATGAGGTCGTTTCCCCTTTATGAAACTTCATTTCTTAGAAGTGAAGGACAAAGATCAGGAAATTTTTTGGTAACCTCAAGTTCTGATCACTCAATCCGTTTGTGGTGGAAGGGTTATTGTCAGAAATGTTTTCGAGGTCATAATGGCCCAGTTTCAATTCTGTCAGATAAACTGTTAGGTGATAGTAACGGCAAATTATTGGCCAGTGGAGGGGAAGATGGTACAGTTCGCCTTTGGTCTCTTAGTTCCAGTGGCAAGCGAGGCAAGAGTGCTTTAAAGGTTACACTACATGGACATGAAAAACCAATTAAATTAATGTCAGTTGCGGGGCATAAGACTTCTCTTTTGGTGAGCATTGCAAGAGACTCCAAGGTAAGAGTTTGGGATGTTACATCAACTATCCGTTCGTCTTGTTGCGTTGGATTAACTTCTCTTCCTGGTGGTCCTATAAACCTTAAGTGCCATGAATCATTGGTCTATGTTGCTACAACTTCCTCCGTTGTTGCAATCGATTTAAGGACTATGCAGAAAGTTCTTACGGCTGCAACTTATCAACCGTTTTTATATTCATTCGAGATGATTCCTTCTAAATCCTTACTATGCACAGGTGGTAGTGGCAGTGCAAAGCTTTGGGATATAAGAAGAAACCAGGATGATCTTAAACCTAAACCTATAGCTGAATTGGATGGACATAGTGGACCAGTGAGCTTCCTACACATGGATCCCTACAAAGTTGTTACGGGATGCCCAAACGATGTTTATGTACACGTTTGGGAGGTCGATTCAGGCACACCAGCGAATTCTTTGAGTTGCTGGTTCGATGAATATACAGAGGGCAGCACAACATTGTCCTCTATGGCTGTTGATGGGTGTAGAATTGCCACTGCGTCTTATGCTGGTGATATAGGACTTTTACGATATATAGACTATACCAATGCTCTTCGTCCTATTGTTAGACACGACGAGGTTGTCTCAAAATTTTGGGTTCCACAATGCTACAACGATGACGATAATTCAAATCTTTAA 2895 43.94 MSYKLTTKTQNKKAEPNTRSPAHAFQLNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLVNSLSQFCIVRFLSEEAFGFLPLLSPSLSPLQIFFSFISLPFQSSFQRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRPAKPNQSPSSPSMDRNQNFPTTITDLDEDSLAHCASFLKRHDIFNLASTCKYLQQVANSDSIWQRLFRERWQHQLPPLGSSLASGGARNAYFARLSDLQQCKFEDPLVASILTQPEPYGPMLLDRDNIFVSQGSSIQMVTITKNVSTLATLNDHNARITCMRSFPLYETSFLRSEGQRSGNFLVTSSSDHSIRLWWKGYCQKCFRGHNGPVSILSDKLLGDSNGKLLASGGEDGTVRLWSLSSSGKRGKSALKVTLHGHEKPIKLMSVAGHKTSLLVSIARDSKVRVWDVTSTIRSSCCVGLTSLPGGPINLKCHESLVYVATTSSVVAIDLRTMQKVLTAATYQPFLYSFEMIPSKSLLCTGGSGSAKLWDIRRNQDDLKPKPIAELDGHSGPVSFLHMDPYKVVTGCPNDVYVHVWEVDSGTPANSLSCWFDEYTEGSTTLSSMAVDGCRIATASYAGDIGLLRYIDYTNALRPIVRHDEVVSKFWVPQCYNDDDNSNL 964
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 25322343 25332794 + CaPI482276_10g011910.1 Cam10g1191 137854
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1191 964 ProSitePatterns Trp-Asp (WD) repeats signature. 739 753 IPR019775 -
Cam10g1191 964 Gene3D ATP synthase (C/AC39) subunit, domain 3 135 456 IPR044911 -
Cam10g1191 964 ProSiteProfiles F-box domain profile. 483 529 IPR001810 GO:0005515(InterPro)
Cam10g1191 964 FunFam V-type proton ATPase subunit 327 430 - -
Cam10g1191 964 SMART WD40_4 660 703 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 SMART WD40_4 797 835 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 SMART WD40_4 844 882 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 SMART WD40_4 607 659 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 SMART WD40_4 712 752 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 Gene3D - 476 560 - -
Cam10g1191 964 Pfam WD domain, G-beta repeat 717 752 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 Pfam WD domain, G-beta repeat 662 703 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 Pfam WD domain, G-beta repeat 611 658 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 Gene3D - 212 320 IPR035067 -
Cam10g1191 964 MobiDBLite consensus disorder prediction 1 20 - -
Cam10g1191 964 Gene3D - 327 430 IPR035067 -
Cam10g1191 964 Pfam ATP synthase (C/AC39) subunit 137 462 IPR002843 GO:0046961(InterPro)
Cam10g1191 964 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 706 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 MobiDBLite consensus disorder prediction 461 484 - -
Cam10g1191 964 ProSiteProfiles Trp-Asp (WD) repeats profile. 642 658 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 SUPERFAMILY V-type ATP synthase subunit C 135 461 IPR036079 -
Cam10g1191 964 SUPERFAMILY WD40 repeat-like 606 927 IPR036322 GO:0005515(InterPro)
Cam10g1191 964 Pfam F-box-like 498 531 IPR001810 GO:0005515(InterPro)
Cam10g1191 964 SUPERFAMILY F-box domain 479 542 IPR036047 GO:0005515(InterPro)
Cam10g1191 964 ProSiteProfiles Trp-Asp (WD) repeats profile. 719 755 IPR001680 GO:0005515(InterPro)
Cam10g1191 964 Gene3D - 597 812 IPR015943 GO:0005515(InterPro)
Cam10g1191 964 FunFam V-type proton ATPase subunit 212 326 - -
Cam10g1191 964 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 719 755 - -
Cam10g1191 964 Gene3D - 813 961 IPR015943 GO:0005515(InterPro)
Cam10g1191 964 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 122 463 IPR016727 GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam10g1191 964 PRINTS G protein beta WD-40 repeat signature 646 660 IPR020472 -
Cam10g1191 964 PRINTS G protein beta WD-40 repeat signature 690 704 IPR020472 -
Cam10g1191 964 PRINTS G protein beta WD-40 repeat signature 739 753 IPR020472 -
Cam10g1191 964 FunFam V-type proton ATPase subunit 135 249 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1191 K02146 - csv:101203260 697.967