Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1191 | ATGTCGTACAAACTCACCACGAAAACCCAAAATAAGAAGGCCGAGCCCAACACTCGAAGCCCAGCCCATGCGTTTCAGCTGAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTGTAAATTCTCTTTCACAGTTCTGCATCGTTAGGTTTCTCTCGGAGGAGGCGTTTGGTTTCTTGCCATTGCTCTCCCCTTCCCTTTCCCCACTCCAGATCTTCTTCTCTTTCATTTCCTTACCGTTTCAATCAAGTTTCCAGAGAATGTATGGTTTTGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAACGAACCATCTCCATTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACTGAGCCTCTGTCTACCTTCTTGGAGTATATCACATATGGTCACATGATAGACAATGTTGTCCTTATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAACACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGGGATGATCGAAGGAAGTTGTATTCCAATTTTGGCTTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTAATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGCCTGCGAAACCAAACCAATCACCATCATCACCGTCGATGGACCGGAATCAGAACTTTCCGACCACCATAACCGACTTGGATGAAGATTCTCTCGCTCACTGCGCTTCATTCCTCAAGCGCCACGACATCTTCAATCTCGCCAGCACCTGCAAATATCTTCAACAAGTTGCAAATTCCGACTCCATTTGGCAACGCCTTTTCAGGGAGCGATGGCAGCATCAGTTACCACCTCTTGGTTCTTCCTTAGCTTCAGGAGGAGCTAGGAATGCGTACTTTGCTAGGCTTTCCGATTTGCAACAGTGCAAGTTTGAAGATCCTTTGGTTGCTAGTATCCTCACCCAACCCGAGCCTTATGGCCCCATGCTTTTGGATAGAGATAATATATTCGTTTCTCAGGGCTCCTCAATTCAAATGGTGACTATCACCAAAAATGTTAGCACTCTTGCCACTCTGAATGATCACAATGCGCGTATCACTTGTATGAGGTCGTTTCCCCTTTATGAAACTTCATTTCTTAGAAGTGAAGGACAAAGATCAGGAAATTTTTTGGTAACCTCAAGTTCTGATCACTCAATCCGTTTGTGGTGGAAGGGTTATTGTCAGAAATGTTTTCGAGGTCATAATGGCCCAGTTTCAATTCTGTCAGATAAACTGTTAGGTGATAGTAACGGCAAATTATTGGCCAGTGGAGGGGAAGATGGTACAGTTCGCCTTTGGTCTCTTAGTTCCAGTGGCAAGCGAGGCAAGAGTGCTTTAAAGGTTACACTACATGGACATGAAAAACCAATTAAATTAATGTCAGTTGCGGGGCATAAGACTTCTCTTTTGGTGAGCATTGCAAGAGACTCCAAGGTAAGAGTTTGGGATGTTACATCAACTATCCGTTCGTCTTGTTGCGTTGGATTAACTTCTCTTCCTGGTGGTCCTATAAACCTTAAGTGCCATGAATCATTGGTCTATGTTGCTACAACTTCCTCCGTTGTTGCAATCGATTTAAGGACTATGCAGAAAGTTCTTACGGCTGCAACTTATCAACCGTTTTTATATTCATTCGAGATGATTCCTTCTAAATCCTTACTATGCACAGGTGGTAGTGGCAGTGCAAAGCTTTGGGATATAAGAAGAAACCAGGATGATCTTAAACCTAAACCTATAGCTGAATTGGATGGACATAGTGGACCAGTGAGCTTCCTACACATGGATCCCTACAAAGTTGTTACGGGATGCCCAAACGATGTTTATGTACACGTTTGGGAGGTCGATTCAGGCACACCAGCGAATTCTTTGAGTTGCTGGTTCGATGAATATACAGAGGGCAGCACAACATTGTCCTCTATGGCTGTTGATGGGTGTAGAATTGCCACTGCGTCTTATGCTGGTGATATAGGACTTTTACGATATATAGACTATACCAATGCTCTTCGTCCTATTGTTAGACACGACGAGGTTGTCTCAAAATTTTGGGTTCCACAATGCTACAACGATGACGATAATTCAAATCTTTAA | 2895 | 43.94 | MSYKLTTKTQNKKAEPNTRSPAHAFQLNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLVNSLSQFCIVRFLSEEAFGFLPLLSPSLSPLQIFFSFISLPFQSSFQRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRPAKPNQSPSSPSMDRNQNFPTTITDLDEDSLAHCASFLKRHDIFNLASTCKYLQQVANSDSIWQRLFRERWQHQLPPLGSSLASGGARNAYFARLSDLQQCKFEDPLVASILTQPEPYGPMLLDRDNIFVSQGSSIQMVTITKNVSTLATLNDHNARITCMRSFPLYETSFLRSEGQRSGNFLVTSSSDHSIRLWWKGYCQKCFRGHNGPVSILSDKLLGDSNGKLLASGGEDGTVRLWSLSSSGKRGKSALKVTLHGHEKPIKLMSVAGHKTSLLVSIARDSKVRVWDVTSTIRSSCCVGLTSLPGGPINLKCHESLVYVATTSSVVAIDLRTMQKVLTAATYQPFLYSFEMIPSKSLLCTGGSGSAKLWDIRRNQDDLKPKPIAELDGHSGPVSFLHMDPYKVVTGCPNDVYVHVWEVDSGTPANSLSCWFDEYTEGSTTLSSMAVDGCRIATASYAGDIGLLRYIDYTNALRPIVRHDEVVSKFWVPQCYNDDDNSNL | 964 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 25322343 | 25332794 | + | CaPI482276_10g011910.1 | Cam10g1191 | 137854 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1191 | 964 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 739 | 753 | IPR019775 | - | |
| Cam10g1191 | 964 | Gene3D | ATP synthase (C/AC39) subunit, domain 3 | 135 | 456 | IPR044911 | - | |
| Cam10g1191 | 964 | ProSiteProfiles | F-box domain profile. | 483 | 529 | IPR001810 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | FunFam | V-type proton ATPase subunit | 327 | 430 | - | - | |
| Cam10g1191 | 964 | SMART | WD40_4 | 660 | 703 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SMART | WD40_4 | 797 | 835 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SMART | WD40_4 | 844 | 882 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SMART | WD40_4 | 607 | 659 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SMART | WD40_4 | 712 | 752 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Gene3D | - | 476 | 560 | - | - | |
| Cam10g1191 | 964 | Pfam | WD domain, G-beta repeat | 717 | 752 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Pfam | WD domain, G-beta repeat | 662 | 703 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Pfam | WD domain, G-beta repeat | 611 | 658 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Gene3D | - | 212 | 320 | IPR035067 | - | |
| Cam10g1191 | 964 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cam10g1191 | 964 | Gene3D | - | 327 | 430 | IPR035067 | - | |
| Cam10g1191 | 964 | Pfam | ATP synthase (C/AC39) subunit | 137 | 462 | IPR002843 | GO:0046961(InterPro) | |
| Cam10g1191 | 964 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 686 | 706 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | MobiDBLite | consensus disorder prediction | 461 | 484 | - | - | |
| Cam10g1191 | 964 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 642 | 658 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SUPERFAMILY | V-type ATP synthase subunit C | 135 | 461 | IPR036079 | - | |
| Cam10g1191 | 964 | SUPERFAMILY | WD40 repeat-like | 606 | 927 | IPR036322 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Pfam | F-box-like | 498 | 531 | IPR001810 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | SUPERFAMILY | F-box domain | 479 | 542 | IPR036047 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 719 | 755 | IPR001680 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | Gene3D | - | 597 | 812 | IPR015943 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | FunFam | V-type proton ATPase subunit | 212 | 326 | - | - | |
| Cam10g1191 | 964 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 719 | 755 | - | - | |
| Cam10g1191 | 964 | Gene3D | - | 813 | 961 | IPR015943 | GO:0005515(InterPro) | |
| Cam10g1191 | 964 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 122 | 463 | IPR016727 | GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cam10g1191 | 964 | PRINTS | G protein beta WD-40 repeat signature | 646 | 660 | IPR020472 | - | |
| Cam10g1191 | 964 | PRINTS | G protein beta WD-40 repeat signature | 690 | 704 | IPR020472 | - | |
| Cam10g1191 | 964 | PRINTS | G protein beta WD-40 repeat signature | 739 | 753 | IPR020472 | - | |
| Cam10g1191 | 964 | FunFam | V-type proton ATPase subunit | 135 | 249 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1191 | K02146 | - | csv:101203260 | 697.967 |