Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1193 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGTAATGACAGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAGAAGCAAGAGCTTCTCGAGAGCTGCAATGCCCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1176 46.51 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGNDRAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25336420 25340521 - CaPI482276_10g011930.1 Cam10g1193 137856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1193 391 MobiDBLite consensus disorder prediction 40 64 - -
Cam10g1193 391 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Cam10g1193 391 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 CDD AP2 64 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 SUPERFAMILY DNA-binding domain 64 133 IPR016177 GO:0003677(InterPro)
Cam10g1193 391 Gene3D AP2/ERF domain 64 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 258 - -
Cam10g1193 391 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 MobiDBLite consensus disorder prediction 31 66 - -
Cam10g1193 391 ProSiteProfiles AP2/ERF domain profile. 65 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 SMART rav1_2 65 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1193 391 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
Cam10g1193 391 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0342 Cam-Chr9:3782107 Cam10g1193 Cam-Chr10:25336420 2.30E-68 dispersed
Cam10g1193 Cam-Chr10:25336420 Cam08g1335 Cam-Chr8:19639220 3.80E-68 dispersed
Cam10g1193 Cam-Chr10:25336420 Cam05g2410 Cam-Chr5:32098728 3.00E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52742 PF00847 AP2 3.10E-08 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1193 - - - 0.0