Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1195 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATAAGGCTGACTAAGGAATTGATGGTGGCTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGGGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTGGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.98 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVASHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25357712 25359287 - CaPI482276_10g011950.1 Cam10g1195 137858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1195 436 SMART amb_all 161 358 IPR002022 -
Cam10g1195 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Cam10g1195 436 Pfam Pectate lyase 171 352 IPR002022 -
Cam10g1195 436 Gene3D - 86 429 IPR012334 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cam10g1195 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cam10g1195 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
Cam10g1195 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1349 Cam-Chr8:19764636 Cam10g1195 Cam-Chr10:25357712 2.50E-185 dispersed
Cam09g1998 Cam-Chr9:34622976 Cam10g1195 Cam-Chr10:25357712 1.50E-128 dispersed
Cam01g1493 Cam-Chr1:28470109 Cam10g1195 Cam-Chr10:25357712 7.00E-180 wgd
Cam10g1195 Cam-Chr10:25357712 Cam05g2653 Cam-Chr5:34010859 1.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1195 K01728 - csv:101202789 824.313