Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1213 ATGGCGGCCTCTGCTCGAGCTTTCTTCCTGTCTCGTGTCACTGACTTTTCAATTAAGCCCCGCCTACCTCCCCAACCACCGCCGCCGCCCCCGCCCTTGCCTTCTTTTTCCTATTCACATCTCAGCCTTCAACGGCGGCGCTTTCCCCCCACGTCTGGTGCAACCACTGTCAGCTGCCTTATCTCCGGTGTTGATGGTGGTGGAGTTTCCGATGACTTTGTTTCTACCCGGAAGTTGAAGTTCGATCGCGGATTCTCCGTAATCGCCAATATGCTTAAGCGGATTGAGCCGCTTGATACATCCGATATCTCCAAGGGCGTTTCTGATGTTGCTAAGGATTCCATGAAGCAGACTATTTCTTCAATGTTGGGTTTGCTTCCGTCGGATCAGTTCGCTGTCACCGTTAGGGTTTCCAAAAGCCCTCTCCATAACCTCCTCTCTTCGTCAATTATCACCGGGTACACTCTGTGGAACGCGGAGTATCGGTTGTCTTTGATGAGGAATTTCGATATCTCGCCGGATAATTTGATGGGCTTGGACAGGTCGAAACCACTTGAAGTATCTGATGTTGAGGAGATTCGGGTTGACGTTGATTCCAATATGGAAGATTTGGATACAAGGCCTCGTATCTTGACCGATTTGCCACCCGAGGCGTTGAAGTACATCCAGCAGTTGCAGTCAGAATTATCAAATCTTAAGGATGAACTTAATGCTCGGAAGCAAGAAAATATGCAGATAGAACATGGCAGAGGAAACAGAAACGATTTGTTAGAGTATCTGCGGTCTTTGGATTCTAATATGGTCACTGAACTCTGCAAACCATCTACGTCGGAGGTGGAGGAAATCATTCACGAGCTTGTTGGAAACATATTGCAAAGGTTCTTCAAAGATGATGCTAGCTCTACTTTCGTTGAGGATTCGAGTGTGGTGGATTTAGAGAAACTTGCAGATGCTGGCAATGAGTTTTGTGACACTGTAGGCACTTCTCGGGATTACCTAGCAAAGCTTTTATTCTGGTGTATGTTATTGGGGCATCACTTGAGAAGCTTGGAGAATAGACTGCAGTTAAGCTGTGTCGTTGGTTATAAGCTCAATGGACAAATTTGTTTGGAAAGCGAGGATTACCAGAGATCGGAAGAGCAATTGGCTCGGCACCGTTTGAATATCTCGGCGATCAACTCTCGCATCTATGTTCTCCATTGCCACAAAATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCAAATTTGTCAATGCCCTCTGGAACAAGCAAAATGAAGAAATGTCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATTAGCCGATCGAAGCCACAAAATGCGTCCAAATCGTTCCGAAGAGGAGTCCAAAGGAGCTCCGACGGAATCAAAACCCTCGGTCGGTCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATTTGAAAGTATCGGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAATAAGCTTTTCGTGCTGTGCTGTATCCTCGCCGTCTCTGTCGATCCACTCTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGCATGGCGTTTCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGAGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACGGAAATCGCCCAGCGGTATCTTCAGCGCTACTTTGTAGCCGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGCTCGGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGCCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGCCAAGCATGCAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGTCCGGTTATAAGGATTGGAGAAATATTAGCGTTGAAGTTCTCACTAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCTTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAACAATGGATGCACCATCGACTTCTTCCGCCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTTTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTATTTGCGAACATGGATGAGCGTCTTCTAGACGCAATATGCGAGAGGCTGAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAGGGCGACCCAGTCGACGAAATGCTTTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGGAGCGGCTTCTACAACCGCGGCGTATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCGAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCATGCCCTTACCGAGGTTGAAGCCTTCGCCTTAGAGGCTGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGGCGCCTGCATAGCCGGCAGGTTCAACACACCTTCAGATTCTACTCTCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGATTGCGGAGCTGCGACGGAAGGAGGAGGAAGAAGAGGATGTGGCGGCGGCTGCGGCTGCGTATGGCACGTCGAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGGGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 3417 48.7 MAASARAFFLSRVTDFSIKPRLPPQPPPPPPPLPSFSYSHLSLQRRRFPPTSGATTVSCLISGVDGGGVSDDFVSTRKLKFDRGFSVIANMLKRIEPLDTSDISKGVSDVAKDSMKQTISSMLGLLPSDQFAVTVRVSKSPLHNLLSSSIITGYTLWNAEYRLSLMRNFDISPDNLMGLDRSKPLEVSDVEEIRVDVDSNMEDLDTRPRILTDLPPEALKYIQQLQSELSNLKDELNARKQENMQIEHGRGNRNDLLEYLRSLDSNMVTELCKPSTSEVEEIIHELVGNILQRFFKDDASSTFVEDSSVVDLEKLADAGNEFCDTVGTSRDYLAKLLFWCMLLGHHLRSLENRLQLSCVVGYKLNGQICLESEDYQRSEEQLARHRLNISAINSRIYVLHCHKMFDCGGYKSQYIGGHKEKFVRLDDLDSNLSMPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMSGYKDWRNISVEVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDVAAAAAAYGTSRLGATILASRFAANALRGHRLRNVSGKSLINLQKPAEPDFSVYKGE 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25495479 25508269 - CaPI482276_10g012130.1 Cam10g1213 137876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1213 1138 ProSiteProfiles IQ motif profile. 1050 1079 - -
Cam10g1213 1138 Gene3D Helix hairpin bin 842 905 - -
Cam10g1213 1138 MobiDBLite consensus disorder prediction 19 38 - -
Cam10g1213 1138 Pfam Protein of unknown function (DUF760) 255 359 IPR008479 -
Cam10g1213 1138 Pfam Protein of unknown function (DUF760) 90 168 IPR008479 -
Cam10g1213 1138 SUPERFAMILY Voltage-gated potassium channels 509 836 - -
Cam10g1213 1138 Coils Coil 222 242 - -
Cam10g1213 1138 CDD CAP_ED 914 1045 IPR000595 -
Cam10g1213 1138 SUPERFAMILY cAMP-binding domain-like 844 1034 IPR018490 -
Cam10g1213 1138 ProSiteProfiles cAMP/cGMP binding motif profile. 914 1044 IPR000595 -
Cam10g1213 1138 Gene3D - 519 839 - -
Cam10g1213 1138 FunFam Cyclic nucleotide-gated ion channel 1 841 905 - -
Cam10g1213 1138 Pfam Cyclic nucleotide-binding domain 935 1025 IPR000595 -
Cam10g1213 1138 FunFam Cyclic nucleotide-gated ion channel 1 912 1030 - -
Cam10g1213 1138 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 489 1115 - -
Cam10g1213 1138 Pfam Ion transport protein 516 841 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1213 1138 Coils Coil 1062 1082 - -
Cam10g1213 1138 Gene3D Jelly Rolls 912 1032 IPR014710 -
Cam10g1213 1138 SMART cnmp_10 914 1045 IPR000595 -
Cam10g1213 1138 MobiDBLite consensus disorder prediction 20 36 - -
Cam10g1213 1138 Coils Coil 375 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0695 Cam-Chr2:8210287 Cam10g1213 Cam-Chr10:25495479 1.30E-39 dispersed
Cam02g1507 Cam-Chr2:28048768 Cam10g1213 Cam-Chr10:25495479 5.80E-304 dispersed
Cam05g0107 Cam-Chr5:1361155 Cam10g1213 Cam-Chr10:25495479 1.80E-161 dispersed
Cam05g0108 Cam-Chr5:1367461 Cam10g1213 Cam-Chr10:25495479 1.70E-85 dispersed
Cam05g0109 Cam-Chr5:1372181 Cam10g1213 Cam-Chr10:25495479 2.60E-62 dispersed
Cam05g1044 Cam-Chr5:9450486 Cam10g1213 Cam-Chr10:25495479 8.90E-89 dispersed
Cam05g1045 Cam-Chr5:9471366 Cam10g1213 Cam-Chr10:25495479 1.70E-113 dispersed
Cam05g1047 Cam-Chr5:9484301 Cam10g1213 Cam-Chr10:25495479 9.10E-107 dispersed
Cam06g1837 Cam-Chr6:29405063 Cam10g1213 Cam-Chr10:25495479 1.20E-181 dispersed
Cam10g1213 Cam-Chr10:25495479 Cam10g1241 Cam-Chr10:25824489 4.50E-186 dispersed
Cam10g1213 Cam-Chr10:25495479 Cam01g0049 Cam-Chr1:868856 2.90E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1213 K05391 - csv:101221166 1367.83