Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1241 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTACACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTCGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAATGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCGCTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGATGACGACAGTGACGACGACGAGGACGACGATGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2148 44.51 MDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLNDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSDDDEDDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25824489 25828122 + CaPI482276_10g012410.1 Cam10g1241 137904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1241 715 Gene3D - 61 381 - -
Cam10g1241 715 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Cam10g1241 715 Gene3D Jelly Rolls 454 574 IPR014710 -
Cam10g1241 715 Gene3D Helix hairpin bin 383 447 - -
Cam10g1241 715 CDD CAP_ED 456 587 IPR000595 -
Cam10g1241 715 SMART cnmp_10 456 587 IPR000595 -
Cam10g1241 715 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Cam10g1241 715 Pfam Ion transport protein 58 383 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1241 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 693 - -
Cam10g1241 715 MobiDBLite consensus disorder prediction 701 715 - -
Cam10g1241 715 MobiDBLite consensus disorder prediction 683 698 - -
Cam10g1241 715 MobiDBLite consensus disorder prediction 683 715 - -
Cam10g1241 715 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Cam10g1241 715 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
Cam10g1241 715 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Cam10g1241 715 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1213 Cam-Chr10:25495479 Cam10g1241 Cam-Chr10:25824489 4.50E-186 dispersed
Cam02g2195 Cam-Chr2:34701455 Cam10g1241 Cam-Chr10:25824489 6.10E-203 transposed
Cam04g0821 Cam-Chr4:22484416 Cam10g1241 Cam-Chr10:25824489 4.90E-174 transposed
Cam05g2840 Cam-Chr5:35468749 Cam10g1241 Cam-Chr10:25824489 1.70E-245 transposed
Cam06g1430 Cam-Chr6:25765846 Cam10g1241 Cam-Chr10:25824489 2.40E-241 transposed
Cam07g1717 Cam-Chr7:31911849 Cam10g1241 Cam-Chr10:25824489 2.00E-92 transposed
Cam10g0598 Cam-Chr10:9172520 Cam10g1241 Cam-Chr10:25824489 1.10E-96 transposed
Cam11g0485 Cam-Chr11:6373777 Cam10g1241 Cam-Chr10:25824489 2.70E-101 transposed
Cam10g1241 Cam-Chr10:25824489 Cam06g1837 Cam-Chr6:29405063 7.50E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1241 K05391 - csv:101216651 1341.64