Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1244 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTCCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGAGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCCGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATCGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 834 47.84 MESGRFLFNPPPSGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKERPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLKSEVASLTEKCQAQGLNGGEAPIPSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25868733 25873098 - CaPI482276_10g012440.1 Cam10g1244 137907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1244 277 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Cam10g1244 277 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Cam10g1244 277 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g1244 277 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam10g1244 277 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Cam10g1244 277 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Cam10g1244 277 Gene3D - 67 130 - -
Cam10g1244 277 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
Cam10g1244 277 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Cam10g1244 277 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Cam10g1244 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 242 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cam10g1244 277 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Cam10g1244 277 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1489 Cam-Chr1:28446946 Cam10g1244 Cam-Chr10:25868733 2.30E-29 dispersed
Cam05g2661 Cam-Chr5:34075845 Cam10g1244 Cam-Chr10:25868733 2.70E-22 dispersed
Cam10g1244 Cam-Chr10:25868733 Cam11g1455 Cam-Chr11:27273164 3.10E-24 dispersed
Cam10g1244 Cam-Chr10:25868733 Cam09g1937 Cam-Chr9:34062022 6.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52747 PF00046 Homeodomain 4.30E-18 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1244 K09338 - csv:101212142 468.003