Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1252 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGCTTAGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACCATGGAGAAGAACAAGAAGAGGGAAGATGAGGAAGGCGTCGGCGTCGGCGGTGGTGGAGGAGGAGGTGTCGGCGGAGGAAGGCCGGCTATCACTAGGCAGGAGTGGGAGATTGACCCTTCTAAACTCATCATCAAAGCCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGGGAAGAGGGGCACAGGTCGGAGGCAGAAATCGCGTCGCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAGGCCTCAAATCCCAATGATATGACTGGCGAGACTGGAACACTTGGGTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTATGGGAAATATACTGCTGCGATATGCCATATCCCGACCTTAGCTTCTCAGAAGTGACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATCGACACATCAAAGGGTGGAGGTATGATCCCCCTCGATCAGTCGCAAGGCTGTTTTTGCTTCCGCAGGTACCGGGGGCCTTGA 1143 47.24 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKKREDEEGVGVGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25943712 25947140 - CaPI482276_10g012520.1 Cam10g1252 137915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1252 380 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 352 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cam10g1252 380 FunFam Kinase suppressor of Ras 1 66 161 - -
Cam10g1252 380 PRINTS Tyrosine kinase catalytic domain signature 212 230 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 PRINTS Tyrosine kinase catalytic domain signature 322 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 PRINTS Tyrosine kinase catalytic domain signature 174 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 SMART serkin_6 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 MobiDBLite consensus disorder prediction 32 48 - -
Cam10g1252 380 Gene3D Transferase(Phosphotransferase) domain 1 177 367 - -
Cam10g1252 380 FunFam Serine/threonine-protein kinase HT1 177 362 - -
Cam10g1252 380 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Cam10g1252 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1252 380 MobiDBLite consensus disorder prediction 32 64 - -
Cam10g1252 380 CDD STKc_MAP3K-like 83 351 - -
Cam10g1252 380 Gene3D Phosphorylase Kinase; domain 1 64 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0571 Cam-Chr5:5078765 Cam10g1252 Cam-Chr10:25943712 5.30E-139 dispersed
Cam09g0709 Cam-Chr9:7040973 Cam10g1252 Cam-Chr10:25943712 1.10E-147 dispersed
Cam10g1252 Cam-Chr10:25943712 Cam11g1142 Cam-Chr11:22404977 3.70E-60 dispersed
Cam01g1435 Cam-Chr1:27902183 Cam10g1252 Cam-Chr10:25943712 5.90E-56 wgd
Cam10g1252 Cam-Chr10:25943712 Cam06g1839 Cam-Chr6:29420180 4.90E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85493 PF07714 PK_Tyr_Ser-Thr 2.20E-64 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1252 - - - 0.0