Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1259 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTCGAGAGGAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGGGCTTTGGAAATGGAAGTGTTAGGCATGGTCCGACAGTGAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTTGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCCTTTTCACCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTACGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTAACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATGGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGGCAAGAGGGGGAGGACGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATCGTGAAGGTAATCGAAAGGCCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAGTATGTCCAATTAGATTAACTCCCAAGTAG 1773 43.09 MAVLQLPCVRITDCSSSPLSRGSKSSLFWGSNLGFGNGSVRHGPTVKASFNGRVVKVFAMSDSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFNILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRPAIAWATWDLMAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26003804 26009190 - CaPI482276_10g012590.1 Cam10g1259 137922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1259 590 Gene3D Protein tyrosine phosphatase superfamily 283 549 IPR029021 -
Cam10g1259 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 282 425 IPR029021 -
Cam10g1259 590 CDD E_set_AMPKbeta_like_N 457 536 - -
Cam10g1259 590 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 444 540 - -
Cam10g1259 590 Gene3D Immunoglobulins 444 540 IPR013783 -
Cam10g1259 590 ProSiteProfiles PDZ domain profile. 77 158 IPR001478 GO:0005515(InterPro)
Cam10g1259 590 SUPERFAMILY PDZ domain-like 59 126 IPR036034 GO:0005515(InterPro)
Cam10g1259 590 SUPERFAMILY E set domains 454 537 IPR014756 -
Cam10g1259 590 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 61 584 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cam10g1259 590 CDD DSP_laforin-like 289 435 IPR045204 GO:0019203(InterPro)
Cam10g1259 590 Pfam Glycogen recognition site of AMP-activated protein kinase 457 538 IPR032640 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1259 - - - 0.0