Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1268 ATGCTGGTTATTCGATCCTGCAGTAGGGTCTTAACGGAAAGGAGAATACGTGTGCAACGGAAGACTATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATCACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCACCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGTTTACCCAAGTATGAAGCATCACACGAGTTTCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAGTATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCCCGAGGTGGGGCTGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA 1617 46.69 MLVIRSCSRVLTERRIRVQRKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26129379 26135982 + CaPI482276_10g012680.1 Cam10g1268 137931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1268 538 MobiDBLite consensus disorder prediction 465 481 - -
Cam10g1268 538 MobiDBLite consensus disorder prediction 357 538 - -
Cam10g1268 538 Pfam Protein kinase domain 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1268 538 Gene3D Transferase(Phosphotransferase) domain 1 144 386 - -
Cam10g1268 538 MobiDBLite consensus disorder prediction 509 538 - -
Cam10g1268 538 MobiDBLite consensus disorder prediction 359 388 - -
Cam10g1268 538 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Cam10g1268 538 FunFam Cyclin-dependent kinase C-2 34 143 - -
Cam10g1268 538 ProSiteProfiles Protein kinase domain profile. 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1268 538 SUPERFAMILY Protein kinase-like (PK-like) 41 354 IPR011009 -
Cam10g1268 538 MobiDBLite consensus disorder prediction 395 409 - -
Cam10g1268 538 FunFam Cyclin-dependent kinase C-2 144 386 - -
Cam10g1268 538 CDD STKc_CDK9_like 47 346 - -
Cam10g1268 538 SMART serkin_6 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1268 538 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
Cam10g1268 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1268 538 PANTHER CELL DIVISION PROTEIN KINASE 47 346 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2482 Cam-Chr2:37278426 Cam10g1268 Cam-Chr10:26129379 1.00E-271 dispersed
Cam10g1268 Cam-Chr10:26129379 Cam11g0058 Cam-Chr11:2172420 7.70E-96 dispersed
Cam10g1268 Cam-Chr10:26129379 Cam10g1276 Cam-Chr10:26177580 4.20E-33 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85494 PF00069 Pkinase 1.30E-74 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1268 K08819 - csv:101215918 970.689