Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1288 ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTCAGTAAACTGCTGAACGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 579 50.43 MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26329080 26331374 - CaPI482276_10g012880.1 Cam10g1288 137951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1288 192 MobiDBLite consensus disorder prediction 172 192 - -
Cam10g1288 192 Coils Coil 104 124 - -
Cam10g1288 192 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Cam10g1288 192 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
Cam10g1288 192 MobiDBLite consensus disorder prediction 134 160 - -
Cam10g1288 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0499 Cam-Chr7:7063589 Cam10g1288 Cam-Chr10:26329080 5.50E-33 dispersed
Cam09g2292 Cam-Chr9:37390670 Cam10g1288 Cam-Chr10:26329080 3.40E-36 dispersed
Cam10g1288 Cam-Chr10:26329080 Cam11g0632 Cam-Chr11:7851178 4.50E-38 dispersed
Cam01g2552 Cam-Chr1:37130821 Cam10g1288 Cam-Chr10:26329080 3.40E-31 transposed
Cam02g1388 Cam-Chr2:26559836 Cam10g1288 Cam-Chr10:26329080 3.00E-39 transposed
Cam11g1136 Cam-Chr11:22193914 Cam10g1288 Cam-Chr10:26329080 5.00E-46 transposed
Cam09g0063 Cam-Chr9:1521117 Cam10g1288 Cam-Chr10:26329080 1.10E-22 transposed
Cam01g1406 Cam-Chr1:27604745 Cam10g1288 Cam-Chr10:26329080 3.70E-49 wgd
Cam10g1288 Cam-Chr10:26329080 Cam06g1875 Cam-Chr6:29809294 3.60E-56 wgd
Cam10g1288 Cam-Chr10:26329080 Cam09g1974 Cam-Chr9:34402756 2.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52749 PF03195 LOB 3.00E-42 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1288 - - - 0.0