Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1289 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGACCGACCAAATTTATCGGAGAAAAGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTGTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATTGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAGATGTGTACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAATCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTCGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGTGCTCATGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1698 42.7 MRIHAPSPLRNEDHTYDDRPNLSEKSDFWDFGNFEEVFRLLCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKRCVPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26343442 26349849 + CaPI482276_10g012890.1 Cam10g1289 137952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1289 565 CDD PKc_MAPKK_plant_like 131 390 - -
Cam10g1289 565 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 107 419 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cam10g1289 565 Pfam Protein kinase domain 134 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1289 565 ProSiteProfiles Nuclear transport factor 2 domain profile. 413 563 IPR018222 -
Cam10g1289 565 ProSiteProfiles Protein kinase domain profile. 130 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1289 565 SUPERFAMILY NTF2-like 411 563 IPR032710 -
Cam10g1289 565 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524(InterPro)
Cam10g1289 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1289 565 SMART serkin_6 130 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1289 565 Gene3D Transferase(Phosphotransferase) domain 1 212 412 - -
Cam10g1289 565 FunFam mitogen-activated protein kinase kinase 3 103 211 - -
Cam10g1289 565 Gene3D - 413 563 - -
Cam10g1289 565 FunFam mitogen-activated protein kinase kinase 3 212 408 - -
Cam10g1289 565 SUPERFAMILY Protein kinase-like (PK-like) 132 422 IPR011009 -
Cam10g1289 565 FunFam Mitogen-activated protein kinase kinase 3 410 564 - -
Cam10g1289 565 Gene3D Phosphorylase Kinase; domain 1 106 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1289 K20607 - - csv:101217978 1004.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1289 Cam-Chr10:26343442 Cam11g0213 Cam-Chr11:3662268 1.50E-65 dispersed
Cam10g1289 Cam-Chr10:26343442 Cam03g1552 Cam-Chr3:30458160 1.80E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam03g1552 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 2.8e-136 481.9
Cam11g0173 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.3e-125 445.7
Cam11g0213 . 214 538 MAP Kinase Kinase Gene Family AT4G26070 55.8 1.9e-108 389.4
Cam03g1552 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.2e-133 472.2
Cam11g0173 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 2.9e-117 418.7
Cam11g0213 . 198 512 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cam10g1289 . 83 565 MAP Kinase Kinase Gene Family AT5G40440 78.9 3.6e-228 787.7
Cam07g1143 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cam04g1070 . 5 321 MAP Kinase Kinase Gene Family AT1G51660 52.4 6.0e-84 308.1
Cam07g1143 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cam04g1070 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.9 3.4e-84 308.9
Cam11g0213 . 189 541 MAP Kinase Kinase Gene Family AT5G56580 83.9 1.8e-170 595.5
Cam03g1552 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 8.7e-120 427.2
Cam11g0173 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 7.6e-108 387.5
Cam04g1070 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.9 3.8e-108 388.3
Cam04g1070 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.5e-80 296.6
Cam04g1070 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 66.7 4.3e-115 411.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85497 PF00069 Pkinase 4.00E-59 CL0016 Cam PK