Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1296 ATGTGGTTCGGAACAAGAGGAAGAGATTTTCATGGAGGGAACATTTCAGAGATAAAGACTGCCATTTTGTACTTCAGAGACTCGGAAATAAACTACAAGGAACTCGCAAAGTTGCTTCACTTTTCTCTCTGTGCTTGCATTGTTGGTTTTGATATTGCTTTGATTGTGAATCAAGGTTCACTGCTTGAGTTTCGGGTCAGCCATCAACAGATCTGGCCTGAGAGTGTGTTTGAGCCGGAGCTGTTGATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTATATCAAGGAATCTCGATTCATCTCGCCAGCCATCTCCTAAACAGTCTAGGAATGAAGCAACTTCTTCGGCGTCCTACCTTTGGTCTCAAAATTGTGCCAAGAAACCCCTTCGCCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCAATTTGAACGTGCAGCTTGAAGGTTTAACTGATGTGAAAAATCATACACACGTTTCTAATAAGGGGAAATCCGAGCTAGTAAACCCAACAGATAGTTCACATAAATCAACTGAAAATTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGAAGCAGAACCTCTTGTGAAGCATATTATCGATGATTCTAAGGATTGTTGTTCAAGTGGCTCAGAAGAATCTGGAAATCAAGTATTGAACGCATCGAAAGTAGCTGCCACGCAAATAATTGATCAACTAAAGTCTCAGCCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAATCTTGTGAAAGCATCGACATCACAAATTCCCTTGATCTTGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAAAGCAATTCGAGTAGTTTAAGCAATGCCATGTATAAGCCTCATAAAGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGGTTGCTGCGAAGACTGGGATGTGGTGATATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACTGAACGCGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACACTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCTGGGGGCGACTTGCATGCACTTAGGCAGAGACAGCCCGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTCTCCCCGACACTTGTTAAATCATCAAACTCGGGGTTAGAAGCTAAAAGCTCGGGTTACTGTGCTCAGCCTGCCTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACACCTCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAGTCCAAACCGAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAACCCACAAGTGCAAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGCAGTGCCGTGGATTGGTGGACTTTTGGGATCTTTCTTTACGAGCTTTTGTTTGGCCGAACTCCGTTCAAGGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCCGAGGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGGATGGAGACACCACACGCACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2262 44.34 MWFGTRGRDFHGGNISEIKTAILYFRDSEINYKELAKLLHFSLCACIVGFDIALIVNQGSLLEFRVSHQQIWPESVFEPELLMEPLVDGMSSLLKTQNPTSISRNLDSSRQPSPKQSRNEATSSASYLWSQNCAKKPLRHPNGSSVSSKKHPTNLNVQLEGLTDVKNHTHVSNKGKSELVNPTDSSHKSTENSFQKKVPLEGGEAEPLVKHIIDDSKDCCSSGSEESGNQVLNASKVAATQIIDQLKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESIDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHAPAGEKMPGVDVKPSGNYLEIDFF 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26438098 26443579 + CaPI482276_10g012960.1 Cam10g1296 137959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1296 753 Pfam Protein kinase domain 362 512 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1296 753 Pfam Protein kinase domain 594 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1296 753 ProSiteProfiles Protein kinase domain profile. 361 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1296 753 SUPERFAMILY Protein kinase-like (PK-like) 336 723 IPR011009 -
Cam10g1296 753 MobiDBLite consensus disorder prediction 97 125 - -
Cam10g1296 753 SMART serkin_6 361 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1296 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1296 753 MobiDBLite consensus disorder prediction 161 198 - -
Cam10g1296 753 FunFam serine/threonine-protein kinase D6PK-like 445 512 - -
Cam10g1296 753 MobiDBLite consensus disorder prediction 174 196 - -
Cam10g1296 753 CDD STKc_phototropin_like 360 720 - -
Cam10g1296 753 Gene3D Transferase(Phosphotransferase) domain 1 592 715 - -
Cam10g1296 753 MobiDBLite consensus disorder prediction 309 333 - -
Cam10g1296 753 Gene3D Transferase(Phosphotransferase) domain 1 445 513 - -
Cam10g1296 753 FunFam Serine/threonine-protein kinase D6PK-like 359 444 - -
Cam10g1296 753 Gene3D Phosphorylase Kinase; domain 1 359 444 - -
Cam10g1296 753 FunFam serine/threonine-protein kinase D6PK-like 592 715 - -
Cam10g1296 753 PANTHER FLIPPASE KINASE 1-RELATED 206 717 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2175 Cam-Chr1:34435293 Cam10g1296 Cam-Chr10:26438098 1.00E-184 dispersed
Cam02g0326 Cam-Chr2:3996590 Cam10g1296 Cam-Chr10:26438098 4.60E-90 dispersed
Cam04g0115 Cam-Chr4:3436219 Cam10g1296 Cam-Chr10:26438098 1.20E-147 dispersed
Cam05g0015 Cam-Chr5:621851 Cam10g1296 Cam-Chr10:26438098 9.50E-182 dispersed
Cam09g0779 Cam-Chr9:7915457 Cam10g1296 Cam-Chr10:26438098 5.30E-39 dispersed
Cam09g0839 Cam-Chr9:8679907 Cam10g1296 Cam-Chr10:26438098 1.20E-54 dispersed
Cam10g1296 Cam-Chr10:26438098 Cam11g0261 Cam-Chr11:4118341 6.70E-114 dispersed
Cam10g1296 Cam-Chr10:26438098 Cam01g1161 Cam-Chr1:18174418 1.20E-198 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85498 PF00069 Pkinase 9.50E-36 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1296 K08286 - csv:101219962 1277.69