Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1299 ATGGCTTCTGGTAATGGGTTTTATCCCACTGATGAATTCAATTTGGATGCTAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATAGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTAACTGAATTACTCACAGGTGGCACATTGCGCAAACATCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCGATCGGGTTTGCGCTTGATATTGCTCGTGCCATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCGTAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAGAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGCTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCATGATCCCACCTCGGATATGTGCTTCTGAAAACGTCGTGATGCCAACCGAATCTCCCGGCACAAATTCCTTGATGGCTGTCAGACATGGCTCAGGGGAAGCCACACACGGCATGATCGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1059 44.0 MASGNGFYPTDEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERIARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKHLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADRKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPMIPPRICASENVVMPTESPGTNSLMAVRHGSGEATHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26466765 26470194 + CaPI482276_10g012990.1 Cam10g1299 137962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1299 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Cam10g1299 352 CDD STKc_MAP3K-like 32 286 - -
Cam10g1299 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cam10g1299 352 Gene3D Transferase(Phosphotransferase) domain 1 108 298 - -
Cam10g1299 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam10g1299 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1299 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Cam10g1299 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1979 Cam-Chr1:33079108 Cam10g1299 Cam-Chr10:26466765 4.30E-81 dispersed
Cam10g1299 Cam-Chr10:26466765 Cam10g2233 Cam-Chr10:35605944 2.40E-114 dispersed
Cam10g1299 Cam-Chr10:26466765 Cam06g1889 Cam-Chr6:29923654 1.30E-157 wgd
Cam10g1299 Cam-Chr10:26466765 Cam09g1981 Cam-Chr9:34470023 2.70E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85499 PF07714 PK_Tyr_Ser-Thr 2.30E-56 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1299 - - - 0.0