Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1313 ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGGTCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTTAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACGACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 708 55.37 MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAAASEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26617262 26618926 + CaPI482276_10g013130.1 Cam10g1313 137976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1313 235 CDD bHLH_AtAIG1_like 61 136 - -
Cam10g1313 235 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983(InterPro)
Cam10g1313 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 124 IPR036638 GO:0046983(InterPro)
Cam10g1313 235 SMART finulus 71 120 IPR011598 GO:0046983(InterPro)
Cam10g1313 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983(InterPro)
Cam10g1313 235 PANTHER TRANSCRIPTION FACTOR BHLH30 44 232 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1313 235 Gene3D - 61 125 IPR036638 GO:0046983(InterPro)
Cam10g1313 235 FunFam transcription factor bHLH30 60 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0658 Cam-Chr3:7434677 Cam10g1313 Cam-Chr10:26617262 2.30E-34 dispersed
Cam06g1113 Cam-Chr6:19193354 Cam10g1313 Cam-Chr10:26617262 2.70E-40 dispersed
Cam08g1628 Cam-Chr8:22502189 Cam10g1313 Cam-Chr10:26617262 9.20E-25 dispersed
Cam10g1313 Cam-Chr10:26617262 Cam11g0635 Cam-Chr11:7880300 2.20E-26 dispersed
Cam10g1313 Cam-Chr10:26617262 Cam05g2506 Cam-Chr5:32888067 1.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52750 PF00010 HLH 3.60E-12 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1313 - - - 0.0