Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1328 ATGGATGTCGATGGAGGCGGTAAGCGCGTTTTTCAGAGGCTGGGCGCGCCTTCCGGAGATTCTAGGAATCAGAAGGTCTGTTACCATTGGAGGGCGGGTAAATGTAATCGCTATCCATGTCCTTTCCTTCACCGTGAGTTAAATGCCCCTCCACATGCGGCTTCGAATGGAGCTGTTAATACTGCCTCGAAGAGGGGTCATGGATTCGCCTCTGATGATTCGACTGTTTCTGTTCCCCGACGGAGTCCCAATTTTAGCGGCGGCTCGACGTGGGGACGAGTTCATGGTGGTGGTAATAGAATAATTAGAAAGACAGAGAAGCTTTGTAATTTTTGGGTTCAGGGGAACTGTGGTTATGGTGATAAGTGTAGATACTTACATTCTTGGAGTTTGGGGGAAAGTTTTTCGCATCTAACGCAGCTTGATGGGCATCAGAAGGTTGTAACTGGGATCGCTTTTCCATCTGGTTCTGATAAGCTTTATACTGGTAGTAAAGATGAGACCGTCAGGGTCTGGGACTGCCAGTCCGGGCAGTGCATGGCTGTTATTAATCTTGGCGGAGAAGTTGGTTCCATGATTGCTGAAGGCCCTTGGGTATTTGTTGGCATACCTAATTTCGTTAAGGCATGGAACATTCAGACCTCAGCTGATCTGACTCTTAGCGGACCCGTTGGCCTAGTTTATGCCCTTGTTGTGGGCAATGATTTACTCTTTGCTGGTACACAGGATGGATCCATATTGGCATGGAGATTTAATGTGGCAACCAACTGCTTTGAGCCAGCTGCATCACTCAACGGCCACACCCTTCCTGTTGTTTCATTAGTTGTCGGAGCTAATAGGCTCTACTCTGGTTCCATGGACCATTCTATTAAAATATGGAGTCTGGAATCTTTACAATGTCTACAGACACTGACAGATCATACATCAGTTGTAATGTCTGTACTTTGCTGGGAGCAATTCCTTTTGTCGTGTTCACTAGATAAGACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTGGAAGTAACTTACACGCAAAAAGAAGATCATGGCTTGCTTACTCTCTGTGGGATGCATGATCAAGATGGGAAGCCTATTTTGTTATGTTCGTGCAATGACAACTCTGTTCGCCTTTATGATTTGCCATCGTTCTCTGAGAGGGGTAAAATATACTCCAAGGAAGAAATTAGATCGATCCAAGCTGGTCCAGGCGGCATCTTCTTTACCGGTGATGGGACTGGACAAGTGAAACCATTTCTTTCCCTCTTGGAGCTTTCATCCTCACACATTTCTCTGCCTGACTTCCGAGCTCGCTTCCATAATGAACGATCTTCTTTCGTGTGTCCAATGTTGCTGCCGTTGGTTCTGCTGGTTAACCACACTATGTGGTCATCTGGAATCCAAGCACGAGTGAAGAAACAGGTTCAAGATACAAAGCTTAGCTTCTTTGAGTTGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGATCAAAGTTGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCTCAAATCCCATCGGCCGCTGCAGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTATATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCGCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAGCTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAAAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 4125 44.17 MDVDGGGKRVFQRLGAPSGDSRNQKVCYHWRAGKCNRYPCPFLHRELNAPPHAASNGAVNTASKRGHGFASDDSTVSVPRRSPNFSGGSTWGRVHGGGNRIIRKTEKLCNFWVQGNCGYGDKCRYLHSWSLGESFSHLTQLDGHQKVVTGIAFPSGSDKLYTGSKDETVRVWDCQSGQCMAVINLGGEVGSMIAEGPWVFVGIPNFVKAWNIQTSADLTLSGPVGLVYALVVGNDLLFAGTQDGSILAWRFNVATNCFEPAASLNGHTLPVVSLVVGANRLYSGSMDHSIKIWSLESLQCLQTLTDHTSVVMSVLCWEQFLLSCSLDKTIKVWAATESGNLEVTYTQKEDHGLLTLCGMHDQDGKPILLCSCNDNSVRLYDLPSFSERGKIYSKEEIRSIQAGPGGIFFTGDGTGQVKPFLSLLELSSSHISLPDFRARFHNERSSFVCPMLLPLVLLVNHTMWSSGIQARVKKQVQDTKLSFFELDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKIKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKLKSHRPLQFLWLKGYRSLIVDWEDYMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26779823 26809225 + CaPI482276_10g013280.1 Cam10g1328 137991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1328 1374 SMART mt_12 1243 1274 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1275 1306 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1171 1203 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1208 1238 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 991 1022 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1063 1094 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1027 1058 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1135 1166 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 SMART mt_12 1099 1130 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 MobiDBLite consensus disorder prediction 56 90 - -
Cam10g1328 1374 CDD SNARE_syntaxin1-like 685 747 - -
Cam10g1328 1374 PANTHER - 21 420 - -
Cam10g1328 1374 Pfam mTERF 1013 1321 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cam10g1328 1374 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 303 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 SUPERFAMILY WD40 repeat-like 126 418 IPR036322 GO:0005515(InterPro)
Cam10g1328 1374 FunFam Syntaxin 132 679 779 - -
Cam10g1328 1374 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872(InterPro)
Cam10g1328 1374 SMART c3hfinal6 21 46 IPR000571 GO:0046872(InterPro)
Cam10g1328 1374 SMART c3hfinal6 105 129 IPR000571 GO:0046872(InterPro)
Cam10g1328 1374 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Cam10g1328 1374 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Cam10g1328 1374 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Cam10g1328 1374 SMART SynN_4 511 637 IPR006011 GO:0016020(InterPro)
Cam10g1328 1374 Pfam Syntaxin 518 721 IPR006011 GO:0016020(InterPro)
Cam10g1328 1374 ProSitePatterns Syntaxin / epimorphin family signature. 692 731 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam10g1328 1374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Cam10g1328 1374 ProSiteProfiles Zinc finger C3H1-type profile. 103 130 IPR000571 GO:0046872(InterPro)
Cam10g1328 1374 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 686 748 IPR000727 -
Cam10g1328 1374 SUPERFAMILY t-snare proteins 516 741 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam10g1328 1374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 173 - -
Cam10g1328 1374 FunFam Syntaxin 132 511 640 - -
Cam10g1328 1374 CDD SynN 516 673 IPR006011 GO:0016020(InterPro)
Cam10g1328 1374 Gene3D - 516 644 - -
Cam10g1328 1374 Gene3D - 117 220 IPR015943 GO:0005515(InterPro)
Cam10g1328 1374 Pfam CCCH-type zinc finger 107 127 IPR041367 -
Cam10g1328 1374 SMART WD40_4 340 381 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 SMART WD40_4 213 250 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 SMART WD40_4 134 173 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 SMART WD40_4 257 294 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 SMART WD40_4 297 334 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 Pfam SNARE domain 722 774 IPR000727 -
Cam10g1328 1374 CDD WD40 137 414 - -
Cam10g1328 1374 Gene3D - 229 445 IPR015943 GO:0005515(InterPro)
Cam10g1328 1374 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 MobiDBLite consensus disorder prediction 56 89 - -
Cam10g1328 1374 SUPERFAMILY CCCH zinc finger 104 128 IPR036855 GO:0046872(InterPro)
Cam10g1328 1374 Pfam WD domain, G-beta repeat 137 173 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515(InterPro)
Cam10g1328 1374 Gene3D - 678 779 - -
Cam10g1328 1374 SMART tSNARE_6 681 748 IPR000727 -
Cam10g1328 1374 FunFam Transcription termination factor MTERF4, chloroplastic 1115 1329 - -
Cam10g1328 1374 Coils Coil 516 550 - -
Cam10g1328 1374 MobiDBLite consensus disorder prediction 1 23 - -
Cam10g1328 1374 FunFam Zinc finger CCCH domain-containing protein 48 221 427 - -
Cam10g1328 1374 FunFam Transcription termination factor mterf4, chloroplastic 977 1114 - -
Cam10g1328 1374 Gene3D Transcription termination factor 3, mitochondrial 977 1116 IPR038538 -
Cam10g1328 1374 Gene3D Transcription termination factor 3, mitochondrial 1117 1330 IPR038538 -
Cam10g1328 1374 Coils Coil 689 709 - -
Cam10g1328 1374 FunFam Zinc finger CCCH domain-containing protein 48 129 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0975 Cam-Chr2:14377334 Cam10g1328 Cam-Chr10:26779823 9.80E-74 dispersed
Cam02g0977 Cam-Chr2:14413903 Cam10g1328 Cam-Chr10:26779823 7.80E-46 dispersed
Cam02g2490 Cam-Chr2:37334797 Cam10g1328 Cam-Chr10:26779823 1.20E-07 dispersed
Cam03g0054 Cam-Chr3:1490271 Cam10g1328 Cam-Chr10:26779823 1.40E-08 dispersed
Cam03g0792 Cam-Chr3:8940496 Cam10g1328 Cam-Chr10:26779823 2.50E-11 dispersed
Cam09g2234 Cam-Chr9:36880547 Cam10g1328 Cam-Chr10:26779823 1.50E-48 dispersed
Cam10g1328 Cam-Chr10:26779823 Cam10g1787 Cam-Chr10:31950722 1.80E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52752 PF02536 mTERF 1.90E-104 No_clan Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1328 K15031 - csv:101203314 971.844