Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1357 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTGAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCGTTATATTCCAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTCGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCGCTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAGTGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAATAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTATTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTATATATGGGTGACAGCATTGGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTTCTGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCGAACGGCTTCTATTCGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATTTATCTTGATTGGAAGAGAAGGCTTCGTATCGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTATTAGATGAACGTCTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTACGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACAAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2835 41.31 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDRLFKAKHFHFSKNQLSGTIPPELFRSEMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGSVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSIAPEWFSNLQSLTTLIVEYGSIRGNLPEGIFSLPRIQQVKLKNNAFSGTLYMGDSIGQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNYCQLQQQQAKPYTTSLVNCGSKSCPSDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNRTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27096260 27103078 + CaPI482276_10g013570.1 Cam10g1357 138020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1357 944 ProSiteProfiles Protein kinase domain profile. 625 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1357 944 CDD STKc_IRAK 631 899 - -
Cam10g1357 944 SMART LRR_typ_2 139 162 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 289 313 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 361 385 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 163 187 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 90 115 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 242 265 IPR003591 -
Cam10g1357 944 SMART LRR_typ_2 314 338 IPR003591 -
Cam10g1357 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 914 - -
Cam10g1357 944 FunFam Predicted protein 188 409 - -
Cam10g1357 944 SMART serkin_6 625 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1357 944 Gene3D Phosphorylase Kinase; domain 1 597 700 - -
Cam10g1357 944 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
Cam10g1357 944 SUPERFAMILY RNI-like 283 440 - -
Cam10g1357 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1357 944 Gene3D Ribonuclease Inhibitor 27 221 IPR032675 -
Cam10g1357 944 Gene3D Ribonuclease Inhibitor 285 433 IPR032675 -
Cam10g1357 944 SUPERFAMILY Protein kinase-like (PK-like) 610 911 IPR011009 -
Cam10g1357 944 PANTHER RECEPTOR-LIKE PROTEIN 55 43 897 - -
Cam10g1357 944 FunFam Leucine-rich repeat protein kinase family protein 595 700 - -
Cam10g1357 944 Gene3D Transferase(Phosphotransferase) domain 1 701 926 - -
Cam10g1357 944 Pfam Protein tyrosine and serine/threonine kinase 627 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1357 944 FunFam Leucine-rich repeat family protein 29 185 - -
Cam10g1357 944 MobiDBLite consensus disorder prediction 907 944 - -
Cam10g1357 944 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cam10g1357 944 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cam10g1357 944 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cam10g1357 944 Pfam Leucine Rich Repeat 291 314 IPR001611 GO:0005515(InterPro)
Cam10g1357 944 SUPERFAMILY L domain-like 39 301 - -
Cam10g1357 944 Gene3D Ribonuclease Inhibitor 222 284 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0002 Cam-Chr2:1179560 Cam10g1357 Cam-Chr10:27096260 1.60E-248 dispersed
Cam04g0624 Cam-Chr4:20231248 Cam10g1357 Cam-Chr10:27096260 1.30E-100 dispersed
Cam10g1357 Cam-Chr10:27096260 Cam10g2256 Cam-Chr10:35750819 0.00E+00 dispersed
Cam10g1357 Cam-Chr10:27096260 Cam10g1358 Cam-Chr10:27104989 6.10E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85501 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1357 - - - 0.0