Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1377 ATGCCCCTCGCCGCCGCCGTAGCTTCCGGTCAAATTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTGAAGCTTCTTCTTCAAAAGGGTTACACTGTTAGAGGCACTGTAAGAAACCCAGATGATCGGAAGAATGATCATTTGAAAGAGTTAGATGGAGCTGAGGAAAGGTTGACGCTGTACAGTGCTGATCTACTTGATTTCGACAGTCTTAAAGCCGCCATTATCGGTTGCGATGGTATTTTCCACACGGCGTCTCCGGTGACTGACGACCCCGAAAAGGTGGAGCAGGCAATAATTGGGACGAAAAATGTTATAATGGCGGCGGCGGAGGCCAAGGTCCGGCGAGTGGTGTTCACATCGTCCATTGGAACTATACACATGAACCCTAATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAATACAAAGAATTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAATGGCAGAGGAGAAAGGGGTGGATTTAGTAGTGGTGAATCCAATGTTGGTGCTTGGACCATTATTACAACAAACAATCAATGCAAGTGTAGCTCATATAATGAAGTACTTGACTGGCTCAGTCAAGACATACGTCAATGCAGTTCAAGGATACGTTCATGTTAAGGATGTTGCAAAAGCTCACTTGTTGGTGTATGAGACTCCCTCTGCATTTGGTAGATATATTTGTGTTGAAACTATGCTTCATCGTGGAGAATTGGTTGAAATTTTGGCTAAATTCTTTCCTGAGTATCCCATTCCTACCAAGTGCTCTGACCAGGTGAACCCTAAGAAGAAACCTTACAAATTTAGTGTAAAAAAGCTGAAGGACTTGGGAATGGATCAATTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAGAGCCTTCAAGAGAAGGGTCATCTTCCACTTCCTTAA 978 44.99 MPLAAAVASGQIVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNPDDRKNDHLKELDGAEERLTLYSADLLDFDSLKAAIIGCDGIFHTASPVTDDPEKVEQAIIGTKNVIMAAAEAKVRRVVFTSSIGTIHMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVAHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLVYETPSAFGRYICVETMLHRGELVEILAKFFPEYPIPTKCSDQVNPKKKPYKFSVKKLKDLGMDQFIPVKQCIYETVKSLQEKGHLPLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27343002 27349811 + CaPI482276_10g013770.1 Cam10g1377 138040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1377 325 CDD FR_SDR_e 13 298 - -
Cam10g1377 325 FunFam Cinnamoyl-CoA reductase 1 4 325 - -
Cam10g1377 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 317 IPR036291 -
Cam10g1377 325 Pfam NAD dependent epimerase/dehydratase family 13 243 IPR001509 -
Cam10g1377 325 Gene3D - 4 325 - -
Cam10g1377 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2475 Cam-Chr5:32611422 Cam10g1377 Cam-Chr10:27343002 1.90E-62 dispersed
Cam06g0186 Cam-Chr6:3710011 Cam10g1377 Cam-Chr10:27343002 1.70E-50 dispersed
Cam10g1377 Cam-Chr10:27343002 Cam10g1379 Cam-Chr10:27362776 1.80E-156 dispersed
Cam10g1377 Cam-Chr10:27343002 Cam10g1378 Cam-Chr10:27358474 2.70E-160 tandem
Cam09g1430 Cam-Chr9:21716567 Cam10g1377 Cam-Chr10:27343002 9.30E-30 transposed
Cam10g1377 Cam-Chr10:27343002 Cam09g0326 Cam-Chr9:3619736 3.80E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1377 K09753 - csv:101219069 614.764