Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1378 ATGCCGATTGATACCTCTGCAGTCTCCGGCCAAATTGTGTGTGTCACCGGCGCCGGCGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACTTAGAAGGAGCTAAAGAGAGATTGTCTTTGTTTAGTGCTGATCTGCTTGATTTTGACAGCCTCAAAGCAGCCATTATGGGTTGTCATGGTGTTTTCCACACTGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAACGTCATGACCGCTGCCGCTGAAGCAAACGTCCGACGAGTGGTGTTCACGTCATCGATCGGCACCGTCTATATGAACCCTAACCGAAGCCCGGACGCGGTAGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAGTGGCAGAACAAACAGCATGGGAAGTGGCAAAAGAAAAAGAAGTGGATCTTGTTGTGGTGAATCCAATGTTGGTATTGGGGCCTTTGTTGCAAGAAGGTGTGAATGCAAGTGTAGTTCATATAATGAAATATTTGACCGGATCAGTAAAGACATATGTAAATGCAGTTCAAGGATATGTTGATGTTAAGGATGTTGCAAAAGCACATGTTTTGGTTTATGAAACTCCTTCAGCTTCAGGCAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATCCTTGCAAACCTCTTTCCTGAATATTCTGTTCCCACCAAGTGCTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACAGTTGAGAAGCTAAAGTCATTGGGAATGGAATTCACACCGATCAAACAATGCATATATGAAACTGTGAAGAGCTTGCAAGAGAAGGGTCATCTTCCACTTCCCTCCAAACTTCAACGCTGA 990 44.44 MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLEFCKNTKNWYCYAKTVAEQTAWEVAKEKEVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSVKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILANLFPEYSVPTKCSDEVNPKKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSKLQR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27358474 27360536 + CaPI482276_10g013780.1 Cam10g1378 138041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1378 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
Cam10g1378 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
Cam10g1378 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Cam10g1378 329 CDD FR_SDR_e 13 298 - -
Cam10g1378 329 Gene3D - 3 329 - -
Cam10g1378 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0326 Cam-Chr9:3619736 Cam10g1378 Cam-Chr10:27358474 8.40E-149 dispersed
Cam10g1262 Cam-Chr10:26070536 Cam10g1378 Cam-Chr10:27358474 4.60E-31 dispersed
Cam10g1378 Cam-Chr10:27358474 Cam10g1380 Cam-Chr10:27374307 2.80E-149 dispersed
Cam10g1377 Cam-Chr10:27343002 Cam10g1378 Cam-Chr10:27358474 2.70E-160 tandem
Cam10g1378 Cam-Chr10:27358474 Cam10g1379 Cam-Chr10:27362776 6.00E-176 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1378 K09753 - csv:116401668 610.912