Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1379 ATGCTGATCGATACCTCTGCAATTTCCGGCGAAATTGTGTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTCGTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACCGTTAGAAACCCAGATGATCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGATTGTCTTTGTTTAGTGCTGATCTCCTTGATTTTGACAGCCTTAAAGCAGCCATTTTGGGCTGTCATGGTGTTTTCCACACCGCGTCTCCTGTGACCGATGACCATGAAAAAGTGGAACAAGCCATAATTGGAACAAAGAACGTCATGACTGCTGCCGTTGAAGCAAACGTTCAACGTGTGGTCTTCACGTCGTCGATCGGGACCGTCTATATGAACCCTAACCGACACCCAGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTACTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTTGATCTTGTAGTTGTAAATCCAATGTTGGTGTTGGGACCTTTGTTGCAAGAAGGTGTGAATGCTAGTGTAGTTCACATAATGAAGTATTTAACGGGATCAGCAAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATATTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTAAAAACTTCTTCCCTCAGTATCCTCTTCCTACCAAGTGTGCTGATGAGATAAATCCCAGAAAGAAACCTTACAAGTACACAGTTGAGAAGCTAAAGTCATTAGGAATGGAATTCACACCAATCAAACAATGCATATATGAAACTGTAAAGAGCCTACAAGACAAGGGTCATCTTCCACTTCCTTCCCAACTTCAACATTGA 990 42.73 MLIDTSAISGEIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAILGCHGVFHTASPVTDDHEKVEQAIIGTKNVMTAAVEANVQRVVFTSSIGTVYMNPNRHPDTVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHILVYETPSASGRYICVESMLHRGELVDILKNFFPQYPLPTKCADEINPRKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQDKGHLPLPSQLQH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27362776 27371293 + CaPI482276_10g013790.1 Cam10g1379 138042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1379 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 315 IPR036291 -
Cam10g1379 329 CDD FR_SDR_e 13 298 - -
Cam10g1379 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 13 314 IPR050425 GO:0016616(PANTHER)
Cam10g1379 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Cam10g1379 329 Gene3D - 3 329 - -
Cam10g1379 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0714 Cam-Chr10:11731215 Cam10g1379 Cam-Chr10:27362776 1.50E-62 dispersed
Cam10g1377 Cam-Chr10:27343002 Cam10g1379 Cam-Chr10:27362776 1.80E-156 dispersed
Cam10g1379 Cam-Chr10:27362776 Cam11g1922 Cam-Chr11:31634104 1.10E-73 dispersed
Cam10g1378 Cam-Chr10:27358474 Cam10g1379 Cam-Chr10:27362776 6.00E-176 tandem
Cam10g1379 Cam-Chr10:27362776 Cam10g1380 Cam-Chr10:27374307 3.80E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1379 K09753 - csv:116401668 615.535