Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1380 | ATGCCGATCGATACCTCTGCAGTTTCCGGCCAAATTGTTTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACCGTTAGAAACCCAAATGACCAAAAGAATGCTCATTTGAACAACTTAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTTTGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAATGTCATGACCGCGGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATCGGCTCTGTCTACATGAACCCTAACCGAAGCCCCGACGTGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAGTGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAAAGGGGTGGATCTTGTGGTCGTAAATCCAATGTTGGTATTGGGGCCTTTGTTGCAAGAAAGTGTGAATGCAAGTGTGGTTCATATAATGAAATATTTAACAGGATCAGCAAAAACATATGTAAATGGAGTTCAAGGTTATGTTGATGTCAAGGATGTTGCAAAAGCCCATGTTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATCTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTGCAAGCTTGTTCCCTCAATATCCTCTCCCTACCAAGTAA | 828 | 44.81 | MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPNDQKNAHLNNLEGAKERLSLFSADLLDFDSLKAAILGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGSVYMNPNRSPDVVVDESCWSDLEFCKNTKNWYCYAKTVAEQAAWEVAKEKGVDLVVVNPMLVLGPLLQESVNASVVHIMKYLTGSAKTYVNGVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILASLFPQYPLPTK | 275 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27374307 | 27375492 | + | CaPI482276_10g013800.1 | Cam10g1380 | 138043 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1380 | 275 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 6 | 273 | IPR036291 | - | |
| Cam10g1380 | 275 | FunFam | Cinnamoyl-CoA reductase 1 | 6 | 275 | - | - | |
| Cam10g1380 | 275 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - | |
| Cam10g1380 | 275 | CDD | FR_SDR_e | 13 | 275 | - | - | |
| Cam10g1380 | 275 | Gene3D | - | 3 | 275 | - | - | |
| Cam10g1380 | 275 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 268 | IPR050425 | GO:0016616(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam10g1378 | Cam-Chr10:27358474 | Cam10g1380 | Cam-Chr10:27374307 | 2.80E-149 | dispersed | |
| Cam10g1380 | Cam-Chr10:27374307 | Cam11g1922 | Cam-Chr11:31634104 | 4.10E-69 | dispersed | |
| Cam10g1379 | Cam-Chr10:27362776 | Cam10g1380 | Cam-Chr10:27374307 | 3.80E-146 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1380 | K09753 | - | csv:116401668 | 513.072 |