Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1383 ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGATATCTAAGCTTCTTGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCATATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCATTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCTCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAACTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA 1308 46.1 MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMISKLLVVDPQKRASMVHIMQSPWFQKGFTKPVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNNFCEKDVRPALKDIVWSWQGESECL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27409550 27410857 - CaPI482276_10g013830.1 Cam10g1383 138046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1383 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
Cam10g1383 435 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
Cam10g1383 435 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Cam10g1383 435 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Cam10g1383 435 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Cam10g1383 435 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1383 435 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1383 435 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1383 435 CDD CIPK_C 308 422 - -
Cam10g1383 435 CDD STKc_SnRK3 15 270 - -
Cam10g1383 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam10g1383 435 Gene3D Kinase associated domain 1, KA1 305 427 - -
Cam10g1383 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1383 435 FunFam Non-specific serine/threonine protein kinase 302 426 - -
Cam10g1383 435 Pfam NAF domain 304 359 IPR004041 GO:0007165(InterPro)
Cam10g1383 435 FunFam Non-specific serine/threonine protein kinase 7 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1365 Cam-Chr6:25096449 Cam10g1383 Cam-Chr10:27409550 5.70E-134 dispersed
Cam06g1557 Cam-Chr6:27047409 Cam10g1383 Cam-Chr10:27409550 2.60E-24 dispersed
Cam08g1647 Cam-Chr8:22655118 Cam10g1383 Cam-Chr10:27409550 3.10E-96 dispersed
Cam10g0212 Cam-Chr10:3829663 Cam10g1383 Cam-Chr10:27409550 4.80E-51 dispersed
Cam10g1383 Cam-Chr10:27409550 Cam11g0055 Cam-Chr11:2136773 7.90E-67 dispersed
Cam11g1814 Cam-Chr11:30636702 Cam10g1383 Cam-Chr10:27409550 5.10E-29 dispersed
Cam10g1383 Cam-Chr10:27409550 Cam05g1800 Cam-Chr5:26800703 1.80E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85503 PF00069 Pkinase 3.30E-77 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1383 - - - 0.0