Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1392 ATGGAGAAGAAGACTTATCCGATTGGCGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCGAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAGTATTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATAATGAAGAGAATGGCATGCTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAGTGAGGAGTTTCTTTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAGCAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATTCCCTATTTTGCAAAAAAGTCACAGCATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCGGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGGCTTCAGGAAGTGCATCATACACGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTCGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGAACAGTTCCATCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAACCAGTTCAGTGGACATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCAGTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGGATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAATTTAGCCAAGCTTTCCAAACTTGCAGGGCTGAATTTGACATCAAATCTACTAAACGGAACAATTCCTGCAGAGATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAGACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAGTATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACTTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTCTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATGCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCTTATCAACAATATGCTGTGGGATTGCTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGAGTCATCAAGGAGATCAAAGATGCCAGATTTTATGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCGACGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTCGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAGAGTACGGATTTGGTTCTACAGCCTCCATGAAAGGAGACGTTTACAGCTTCGGCGTGCTAGTTCTAGAGATGGTAACAAGAAAAAGGCCAATAGACGACATGTTTGTTGAAGGGCTAAGTTTACATAAGTGGGTGAAGAATCATTACTACGGCAGAGTAGAAAAAGTAGTGGATTATTCTCTACAGAGAGCTTCGAGAGATGAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTAGGTTTGCTCTGCACTCAAGAATCTCCATCCACAAGACCAACAATGCTGGATGCTGCTGATGACTTGGATCGATTGAAGAGATACCTTAATGGTGGCGACACCACAACAACATTTGCTTCATCACTTGGAATTTCGTCCTCCACTCTTGGCGATGACTCCAATTACTCCCCACAAATCGCCGTTGACAGAAACATCTAG 5124 41.14 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEISDNEENGMLRRQPSMKANDTVEGKKSINESTIIGSSSQHYSSPIENGSSEEFLLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSLAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAAFPILQKSHSMQVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRKKKCKAVKDDMMREEGNLTGHFHCSIVLRLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLGFRKCIIHDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPSSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGHLPLSLRNTSLYNLDVEYNHLSGELPAVLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPNLAKLSKLAGLNLTSNLLNGTIPAEISRLSKLEQLFLSHNLFTSDIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGSIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGMPACSGKRNRFQSPVFLTIFILIICISSFLSTICCGIACQRLKAIVSARNSESSRRSKMPDFMHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYRRSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAPEYGFGSTASMKGDVYSFGVLVLEMVTRKRPIDDMFVEGLSLHKWVKNHYYGRVEKVVDYSLQRASRDESPEMKKMWEVAIRELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGGDTTTTFASSLGISSSTLGDDSNYSPQIAVDRNI 1707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27576085 27593581 - CaPI482276_10g013920.1 Cam10g1392 138055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1392 1707 Gene3D Transferase(Phosphotransferase) domain 1 1447 1678 - -
Cam10g1392 1707 SMART LRR_typ_2 1054 1077 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 852 876 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 1247 1271 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 1078 1102 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 1126 1150 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 1175 1199 IPR003591 -
Cam10g1392 1707 SMART LRR_typ_2 1223 1246 IPR003591 -
Cam10g1392 1707 Pfam Leucine Rich Repeat 1129 1149 IPR001611 GO:0005515(InterPro)
Cam10g1392 1707 Pfam Leucine Rich Repeat 1177 1199 IPR001611 GO:0005515(InterPro)
Cam10g1392 1707 Pfam Leucine Rich Repeat 879 901 IPR001611 GO:0005515(InterPro)
Cam10g1392 1707 ProSitePatterns Protein kinases ATP-binding region signature. 1377 1399 IPR017441 GO:0005524(InterPro)
Cam10g1392 1707 ProSiteProfiles Protein kinase domain profile. 1371 1671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 MobiDBLite consensus disorder prediction 446 530 - -
Cam10g1392 1707 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cam10g1392 1707 SUPERFAMILY Protein kinase-like (PK-like) 1346 1664 IPR011009 -
Cam10g1392 1707 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Cam10g1392 1707 Gene3D Ribonuclease Inhibitor 853 926 IPR032675 -
Cam10g1392 1707 Gene3D Ribonuclease Inhibitor 739 852 IPR032675 -
Cam10g1392 1707 SUPERFAMILY L domain-like 1029 1286 - -
Cam10g1392 1707 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1447 1677 - -
Cam10g1392 1707 PANTHER OS04G0122200 PROTEIN 758 870 IPR051809 -
Cam10g1392 1707 Gene3D Ribonuclease Inhibitor 927 1302 IPR032675 -
Cam10g1392 1707 MobiDBLite consensus disorder prediction 404 432 - -
Cam10g1392 1707 FunFam Leucine-rich repeat receptor-like protein kinase TDR 978 1296 - -
Cam10g1392 1707 Coils Coil 651 671 - -
Cam10g1392 1707 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1352 1446 - -
Cam10g1392 1707 SMART serkin_6 1371 1671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1498 1510 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 MobiDBLite consensus disorder prediction 377 432 - -
Cam10g1392 1707 Pfam Protein kinase domain 1373 1660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1392 1707 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cam10g1392 1707 CDD STKc_IRAK 1377 1667 - -
Cam10g1392 1707 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Cam10g1392 1707 Pfam Leucine rich repeat 1202 1260 IPR001611 GO:0005515(InterPro)
Cam10g1392 1707 Pfam Leucine rich repeat 1033 1091 IPR001611 GO:0005515(InterPro)
Cam10g1392 1707 CDD STKc_OSR1_SPAK 11 274 - -
Cam10g1392 1707 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cam10g1392 1707 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 777 970 - -
Cam10g1392 1707 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cam10g1392 1707 MobiDBLite consensus disorder prediction 483 502 - -
Cam10g1392 1707 Pfam Leucine rich repeat N-terminal domain 739 777 IPR013210 -
Cam10g1392 1707 SUPERFAMILY L domain-like 739 963 - -
Cam10g1392 1707 MobiDBLite consensus disorder prediction 446 474 - -
Cam10g1392 1707 Gene3D Phosphorylase Kinase; domain 1 1332 1446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1395 Cam-Chr6:25371915 Cam10g1392 Cam-Chr10:27576085 5.00E-15 dispersed
Cam06g1396 Cam-Chr6:25389024 Cam10g1392 Cam-Chr10:27576085 3.80E-109 dispersed
Cam09g1954 Cam-Chr9:34212468 Cam10g1392 Cam-Chr10:27576085 1.00E-158 dispersed
Cam10g0085 Cam-Chr10:2438802 Cam10g1392 Cam-Chr10:27576085 9.70E-142 dispersed
Cam10g1392 Cam-Chr10:27576085 Cam10g2097 Cam-Chr10:34640480 4.30E-68 dispersed
Cam10g1392 Cam-Chr10:27576085 Cam05g0511 Cam-Chr5:4563062 7.90E-86 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g1814 . 69 756 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 5.0e-225 777.7
Cam11g1184 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cam11g1814 . 69 753 MAP Kinase Kinase Kinase Kinase AT3G15220 65.8 8.0e-231 797.0
Cam11g1184 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cam11g1184 . 2 825 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 5.7e-244 840.9
Cam07g0700 . 1 383 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 1.8e-117 420.6
Cam09g1954 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Cam05g0511 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Cam10g0085 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 4.5e-248 854.4
Cam10g0085 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 6.1e-247 850.5
Cam10g1392 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.0e-132 469.9
Cam10g0085 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cam10g1392 . 1 671 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 1.2e-215 746.5
Cam09g1954 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Cam10g1392 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cam10g0085 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cam05g0511 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85504 PF00069 Pkinase 7.10E-42 CL0016 Cam PK